similar to: Matrix Package, sparseMatrix, more NaN's than zeros

I am getting the following problem with make check-all on the June 24 rc. I realize I could probably fix it by installing/setting a path to the sty file, but I don't remember having to do that for make check-all in the past. Paul Gilbert ___________ .... checking package 'Matrix' * checking for working pdflatex ... OK * using log directory

Hi! I have three models. In the first model, everything is fine. However, in the second and third models, I have NA's for standard errors: The hessians also have NaN's (same for m2 and m3). What should I do about it? It there a way to obtain the hessian without transforming my variables? I will greatly appreciate your help! -- View this message in context:

Kevin Wright wrote: > library(nlme) > m2 <- gnls(conc ~ t1*(1-t2*exp(-k*time)), > data = df.Chloride, > start = list( > t1 = 35, > t2 = 0.91, > k = 0.22)) So my error was to use nls instead that gnls. Thanks a lot, Kevin. > summary(m2) > plot(m2) > lag.plot(resid(m2), do.lines=FALSE) >

I would like to perform partial mantel tests on only within group values, with "between group" values assigned to NA. This is possible in package ncf partial.mantel.test, however this sues a different permutation to that used in ecodist.ecodist will not accept data with NA values, returning a "matrix is not square error. is it possible to perform this test in ecodist? many thanks

Hi, I have a data-matrix: > PID sato hrs fim health 214 3 4.376430 6.582958 5 193 6 4.361825 3.138525 6 8441 6 4.205771 3.835886 7 7525 6 4.284489 3.245139 6 6806 7 4.168926 2.821833 7 5682 7 1.788707 1.212653 7 5225 6 1.651463 1.436980 7 4845 6 1.692710 1.267359 4 4552 5 1.686448 1.220539 6

Hi all, I have a matrix simulating migration in a spatial model. I want to be able to define movement (the values of m1, m2 and m3) as only != 0 between adjacent patches and contingent on certain conditions as defined in the function. Here is the code: WET<-function(t) {everglades$precipitation[t]} #simply reads precipitation data from a csv, value is numeric AB<-function(WET,t)

Dear All, I am new for R and SEM. I try to fit the model with Y (ordinal outcome), X (4 categorical data), M1-M3 (continuous), and 2 covariates (Age&sex) as a diagram. library(polycor) model.ly <-specify.model() 1: x -> m1, gam11, NA 2: x -> m2, gam12, NA 3: x -> m3, gam13, NA 4: age -> m1, gam14, NA 5: age -> m2, gam15, NA 6: age -> m3, gam16, NA 7: sex -> m1,

Hi all, I've been working with a friend's model that is a spatial model consisting of 4 patches. She uses the code found below to add migration between the patches for the three species of concern. When I run a script incorporating this code, all four patches run independently without migration occuring. When I type m1[1,2] into the workspace to see if it will return a figure, it returns,

first, apologies for so many posts yesterday and today. I am wrestling with nls() and nls2(). I have tried to whittle it down to a simple example that still has my problem, yet can be cut-and-pasted into R. here it is: library(nls2) options(digits=12); y= c(0.4334,0.3200,0.5848,0.6214,0.3890,0.5233,0.4753,0.2104,0.3240,0.2827,0.3847,0.5571,0.5432,0.1326,0.3481) x=

Hi I have a small ISDN PABX , (BRI) at home - Siemens Gigaset 4175 which has cordless DECT extensions. I have set up asterisk on FC3 with two HFC cards and I am using the latest bristuff. I am trying to use * between my ISDN line and my PABX. One card is in TE mode and can receive and make calls OK. I can make and receive external calls to a SIP phone. I cannot get the other card to talk to my

Thank you David. Using xtabs operation simplifies the code very much, many thanks ;) On Tue, Jun 6, 2017 at 7:44 AM, David Winsemius <dwinsemius at comcast.net> wrote: > > > On Jun 6, 2017, at 4:01 AM, Jim Lemon <drjimlemon at gmail.com> wrote: > > > > Hi Bogdan, > > Kinda messy, but: > > > > N <-

Hello, My name is Ick Hoon Jin and I am Ph. D. student in Texas A & M Univ.. When I run the C embedded in R in the Linux system, I confront the following error after 6,000 iteration. By googling I found this error is from the problem in C. *** caught segfault *** address (nil), cause 'memory not mapped' My C code is following:

I have a big database which more classes in class variable. I want to make each class to one dataset, for example: x1 x2 x3 x4 class a b a c c M1 c b b c c M4 c c a c c M2 c a c a a M2 c c a a a M1 c a b c a M3 c c a b c M3 c a c a b M2 c c a b a M1 How can I make, like: x1 x2 x3 x4 class a b a c c M1 c c a a a M1 c

Dear Contributors I have a problem with the collection of data from the results of a test. I need to perform a comparative test over groups of data , recall the value of the pvalue and create a table. My problem is in the way to replicate the analysis over and over again over subsets of data according to a condition. I have this database, called y: gg t1 t2 d 40 1 1

Here's another approach: N <- data.frame(N=c("n1","n2","n3","n4")) M <- data.frame(M=c("m1","m2","m3","m4","m5")) C <- data.frame(n=c("n1","n2","n3"), m=c("m1","m1","m3"), I=c(100,300,400)) # Rebuild the factors using M and N C$m <-

Simple matrix indexing suffices without any fancier functionality. ## First convert M and N to character vectors -- which they should have been in the first place! M <- sort(as.character(M[,1])) N <- sort(as.character(N[,1])) ## This could be a one-liner, but I'll split it up for clarity. res <-matrix(NA, length(M),length(N),dimnames = list(M,N)) res[as.matrix(C[,2:1])] <-

> On Jun 6, 2017, at 4:01 AM, Jim Lemon <drjimlemon at gmail.com> wrote: > > Hi Bogdan, > Kinda messy, but: > > N <- data.frame(N=c("n1","n2","n3","n4")) > M <- data.frame(M=c("m1","m2","m3","m4","m5")) > C <-

A few days ago, I had asked this question. Consider this situation: > x1 <- runif(100); x2 <- runif(100); y <- 2 + 3*x1 - 4*x2 + rnorm(100) > m1 <- summary(lm(y ~ x1)) > m2 <- summary(lm(y ~ x2)) > m3 <- summary(lm(y ~ x1 + x2)) You have estimated 3 different "competing" models, and suppose you want to present the set of models in one table. xtable(m1) is

Hi, I am having an issue when creating a postscript file from RGL window. It seems to cut off some of the axis labels. Here is the code I am using. I created a 3D plot using RGL_0.71 with R 2.5 on Windows XP. z1<-c(5,4,1,4.5,2,3,2,1,1) z2<-c(6,8,7,7.5,5,3.5,4,1,1) z3<-c(3,2,4,7,3,4.5,6,2,3) x1<-seq(1,9) x2<-seq(1,9) x3<-seq(10,18) y1<-seq(8,0) y2<--1*y1

Since I had a problem and resolved with the JuiceSSH app on Android a couple of weeks ago, I've had a new problem with one of my local machines. Although I've checked everything I remember changing back then, I can't find the cause and would appreciate a clue or two. (Note, JuiceSSH is not involved in this problem.) I have four local machines which should be able to use "ssh