similar to: Is there a way to _remove_ dependencies from an RPM built from source?

All, While updating my package using dnf update all I allow dnf to clean some package with unresolved dependencies. I would like to reinstall some of them but got an error message "but none of the providers can be installed" during the install process as dnf is trying to install the dependencies. . This happens for some critical package like boost-openmpi-devel (see below for

Greetings. I see a warning message while compiling OpenMPI and would appreciate it if you tell me what it means. This warning happens with any OpenMPI > 1.6.5. Even before starting a cluster, just "sessionInfo" triggers this warning. I'm pasting in the message from R-3.3.2 (this is MRO). Do the R parallel package cluster functions violate the warnings described here? >

Just as a followup even g++ is broken: [piot at paris ~]$ g++ bash: g++: command not found... Install package 'gcc-c++' to provide command 'g++'? [N/y] y * Waiting in queue... The following packages have to be downgraded: cpp-8.2.1-3.5.el8.x86_64 The C Preprocessor glibc-2.28-42.el8.1.i686 The GNU libc libraries glibc-2.28-42.el8.1.x86_64 The GNU libc libraries

After the 7.2 upgrade?boost-openmpi-1.53.0-25 was installed, along with?openmpi-1.10.0-10. ?The old openmpi was then replaced with?compat- openmpi16-1.6.4-10. ?All fine. Except boost-openmpi has a dependency on the old libmpi.so.1 and the new openmpi has libmpi.so.12: # ldd libboost_mpi-mt.so.1.53.0? linux-vdso.so.1 =>??(0x00007ffe8c182000) libboost_serialization-mt.so.1.53.0 =>

I just installed Rmpi on my 64-bit Ubuntu Hardy Heron OS and using the following without errors: "R CMD INSTALL Rmpi_0.5-5.tar.gz --configure-args=--with-mpi=/usr/lib64/openmpi" Immediately at library(Rmpi) I get the segfault displayed in my complete output below. My first thought is that perhaps I used the wrong library for openmpi, but with my 64 bit install it seemed like a logical

Hello, I try to install pbdMPI. Compilation successful, but load fails with segfault. Is anyone can help me? R version 3.0.0 pbdMPI version 0.1-6 Intel compiler version 13.1.1 OpenMPI version 1.6.4-1 CPU Intel x86_64 # R CMD INSTALL pbdMPI_0.1-6.tar.gz .. .... checking for gcc... icc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name...

Just wondering if anyone can shed some light into an issue we are having with compat-openmpi after upgrading CentOS to version 6.5 Some of our cluster applications are dependent on an older version of OpenMPI, so we are using compat-openmpi. Up to CentOS 6.4 this was version 1.4.3: % /usr/lib64/compat-openmpi/bin/mpirun -V mpirun (Open MPI) 1.4.3 but after the upgrade to CentOS 6.5 it

Thanks, Stephen. Just for completeness, the repo I am currently pointing to are [piot at paris opal]$ sudo dnf update CentOS-8 - AppStream 775 kB/s | 5.8 MB 00:07 CentOS-8 - Base 798 kB/s | 4.0 MB 00:05 CentOS-8 - Extras 2.9 kB/s | 2.1 kB 00:00 CentOS-8 - PowerTools 686 kB/s | 2.0 MB 00:02

Hi guys, I've spent a few days trying to install Rmpi with no luck. I originally tried using mpich, moved on to mpich2, and then to openmpi. I've gotten the furthest with openmpi, though am still running into this problem and can't figure it out. Can someone help!? Thanks so much in advanced. I'm using an HP Envy laptop with Ubuntu 12.04. Output is below, with the error at the

I am trying to install the R package "Rmpi" which needs libmpi. I've installed openmpi and lam in Centos 5.2: [root at rab45-1 /]# rpm -qv openmpi openmpi-1.2.5-5.el5 openmpi-1.2.5-5.el5 [root at rab45-1 /]# rpm -qv lam lam-7.1.2-14.el5 lam-7.1.2-14.el5 But I get the following error message when trying to install Rmpi: /usr/bin/ld: skipping incompatible /usr/lib/lam/lib/libmpi.so

Hello everyone, My progress has stalled on finding a way of creating a somewhat complicated variable to add to my existing dataframe and I am hoping one of you could help me out. The dataframe below contains only a fraction of the data of my complete dataframe, but all of the variables. What I want to do is add another variable named 'WEEK' to this dataframe that is assigned 1 for row 1

Hi folks, While building openmpi.4.0.0(Optimized debug build), using trunk clang we encountered a crash(assertion failure). Initially assertion seems trivial: [...] void llvm::DwarfExpression::addFragmentOffset(const llvm::DIExpression*): Assertion `FragmentOffset >= OffsetInBits && "overlapping or duplicate fragments"' failed. [...] But, narrowing to RC. We discovered

Dear knowledgeable experts :-), I am trying to get openmpi, Rmpi and SNOW running on a Myrinet/GM cluster. I'm not an IT expert, but I surely could use a working installation of Rmpi and SNOW. I try to load the Rmpi library and get the following: > library(Rmpi) [master:07230] mca: base: component_find: unable to open osc pt2pt: file not found (ignored)

Hi list, It appears there is a problem with the OpenMPI I/O library on CentOS 6.2 & 6.3 (package openmpi-1.5.4-1.el6.x86_64). When I compile the attached program it ends up in the error path since MPI_File_open returns 16. The corresponding (unhelpful) message is: MPI_ERR_OTHER: known error not in list I couldn't find any pointers on the net and the same program works with OpenMPI

Hello, I plan to use R with my cluster with OpenMPI. I need the packaged 'snow' and 'Rmpi' for that, however, I get an error while downloading and installing them: When I do a: install.packages("Rmpi", dependencies=T) I get this error: checking for mpi.h... no Try to find libmpi.so or libmpich.a checking for main in -lmpi... no libmpi not found.

Hello R users and developers, I would like to install Rmpi so that I may take advantage of all of the CPUs in my computer, but I cannot get it to install and I am not very good with linux so it is adding to the headache. I have looked through the help archive, but I have not been successful at getting Rmpi to work. I am not sure if I am even installing openMPI correctly in linux. I would really

Sorry to take so long to reply ... On Thu, 2015-12-17 at 11:53 -0500, Tony Schreiner wrote: > Did you load the compat-openmpi environment module? > > module load mpi/compat-openmpi16-x86_64 Yes, but you can't load both mpi/openmpi-x86_64 and?mpi/compat- openmpi16-x86_64 as they are labelled as conflicting. As I said, if you load just mpi/compat-openmpi16-x86_64 it can't find

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

I'm observing that the new staged installation in R 3.6.0 can produce: mv: cannot move ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-codetools/00new/codetools? to ?/home/alice/R/x86_64-pc-linux-gnu-library/3.6/codetools?: File exists ERROR: moving to final location failed on some file systems. # EXAMPLE $ R --vanilla R version 3.6.0 (2019-04-26) -- "Planting of a Tree"

Hi all, I'm trying to get the snow package with mpi working on my linux ubuntu 10.04 machine. When I tried to install it (see below) it already had problems with the dependencies. R version 2.14.0 (2011-10-31) Copyright (C) 2011 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You