similar to: Solved: RE: help filtering points from a scatterplot

Dear useRs, I'm having trouble with what is likely a very simple issue with a simple graph. I have data in the format pasted below - total from which this is a subset is > 3 million rows. I'm plotting "Window" on the x axis, and either of the other two columns on the y axis. In both the second and third columns, the values are in a range from 0 to 1. I want to be able to plot

Thanks to David and Jorge - both of your helpful suggestions got me to the desired endpoint. In case anyone else has this question: I boxplotted my y variable data, but did the "cut" operation on the x variable in order to conserve the order of the y data. I see another suggestion coming in from another user that basically says this. So, my working line of code was: boxplot(count$RPKM

I was wondering if anyone has a way out of the limitation that you must use equal length x,y, and z sequence lengths. For instance, x<-seq(1,100) y<-seq(1,100) z<-rnorm(100) scatterplot3d(z,x,y) works fine. However, if I get some results that has a different y subset length, such as x<-seq(1,100) y<-seq(1,300) z<-rnorm(100) scatterplot3d(z,x,y) I get the following error:

Hi everyone, is there a way/package in R that would allow me to select a group of points from a scatterplot by drawing a circle around them or some such? I can use 'identify' to pick individual points, but that gets tedious if one has more than 10-20 spots. I can easily select spots within a rectangle defined by picking points using identify... but a simple rectangle sometimes will

Command I am using for the plot: plot(Raw[][Plate==101]~well[][Plate==101], xlab="Well", ylab="Raw", main="Plate 101") I only want to label points on the graph where well equals B13, G13, K14 and N14 with the name of the well. Thank you for your help. -- View this message in context:

Hi all, I have been looking for means of add a contour around some points in a scatterplot as a means of representing the center of density for of the data. I'm imagining something like a 95% confidence estimate drawn around the data. So far I have found some code for drawing polygons around the data. These look nice, but in some cases the polygons are strongly influenced by outlying points.

Hi There, I'm attempting to plot 10 values on a three-dimensional PCA with text labels next to each point. While i have no trouble doing this on 2D plots using the 'text' or 'textxy' function, I cannot find a function to do this on a 3D plot. I am using princomp for my PCA: >PCA<-princomp(eucdata, cor=TRUE) >PCA$scores [,1:3] # the three principal components i

Dear all, How can I label/unlabel points on scatterplot with mouse pointer. As the mouse approches near to point, it should label the closest point, then unlabel when it moves away. How can I do in R? I be very thankful. Thanks and Regards, Hitesh Singla -- This message has been scanned for viruses and dangerous content by MailScanner, and is believed to be clean.

Thanks Don and Jim, "Get" did the trick! That command is new to me, and is exactly what this problem needed. The syntax that worked is actually slightly simpler than what was suggested. This is what worked: all.comps <- ls(pattern="^res") for(i in all.comps){ obj = get(i); ... Thanks again. --Kelly V. -----Original Message----- From: MacQueen, Don [mailto:macqueen1 at

Hello, I am new to R and would like to know how to label data points in the matrices of scatterplots made by the pairs() command. To be more specific, I want to assign a number to each data point, instead of the small circumference that appears as a data point. If anyone here knows if its possible to do this with R, I would greatly appreciate your help. Thank you, Mauricio Esguerra PhD

Hello all, I'm trying to graph a scatterplot of a large (5,000 x,y coordinates) of data with the caveat that many of the data points overlap with each other (share the same x AND y coordinates). In using the usual "plot" command, > plot(education, xlab="etc", ylab="etc") it seems that the overlap of points is not shown in the graph. Namely, there are

Hello R folks, I am encountering a problem with the following scatterplot function from the car package: > scatterplot(y~x|z) where y and x are continuous (interval) random variables and z is a categorical variable. When z is a categorical variable coded 1 or 2, I (appropriately) get a scatterplot of y by x, coded by z. Similarly, when z is a categorical variable coded 1, 2, or 3, there is

Dear R helpers I'm attempting to create a matrix of scatterplots with X-Y mean lines and regression lines added to each plot in the matrix. I have managed to create the first plot I would like using scatterplot but have run into an odd result when I use par() to set up the page to take multiple plot. Specifically, the mean and regression lines appear to plot in the second plot window, not

Hi my friends, I'm trying to make a scatterplot like this. 1) I have a 3-variable dataset. They are ID, x, and y. 2) "x" is for the X-axis, "y" for the Y-axis, and "ID" is used to label all the cases in the scatterplot. 3) After creating the scatterplot, I need to add both a X-axis reference line and a Y-axis reference line. The X-axis reference line is a

I am getting an error message from scatterplot: > library(car) > scatterplot(Prestige$income~Prestige$type) Error in Summary.factor(c(2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, 2L, : range not meaningful for factors In addition: Warning message: In Ops.factor(x[floor(d)], x[ceiling(d)]) : + not meaningful for factors > The command does output the kind of graph that I want (boxplots).

Hello R users, I have some troubles to modify the "per default" legend in the scatterplot.matrix using the car package. Here is my code: -------------------------------------------------------------------- scatterplot.matrix(~ a + b + c, groups=treatment, by.groups=F, data=newfile3, smooth=T, pch=c(16,4), cex=1.3,

Dear all, I'm trying to use "scatterplot" from package "car" to get a scatterplot with row-names as labels and I want my data to be divided into two groups defined by the column "tresh". Leaving away the groups-command gives me the right labels but they are not distinguished by colors according to "tresh". Does anybody know why the following example

Hi All. I'd like to change the default plotting colors used to construct a scatterplot with regression line in the CAR package. So, scatterplot(y~pred,smooth=FALSE, xlab="X", ylab="Y", lwd=2) If I change the palette (e.g., palette(ranbow(6)), I can change the color of the lines and points. However, the axes and labels remain in black (i.e., the first color in the

Hi, I am trying to do plot a scatterplot matrix using pairs() from the package graphics. There are now a few things I'd like to improve for a better understanding. 1) My scatterplot uses two log-scaled axis...as I don't know how to set them in pairs() I calculated the log before but now the labels are not as I want them. I'd like them as 10^1,10^2 etc. What is the best way to handle

Hi All, I'm trying to do a Scatterplot (package: car), and add a line (just for reference). There is my code: #------------------------------------Code--------------------------------------------------- library("car") library("calibrate") G_T<-c("car","bike","boat") ave<-c(80,10,45) perf<-c(100,80,75) df2<-data.frame(G_T,ave,perf)