similar to: Link to a Network computer

Dear all, Using the SetInternet2(TRUE) option works wonders with R in my sealed down work-environment. However, I'd like to use RCurl and apparently the proxy settings are not carried over. Is it possible to figure out the proxy-IP and port number from R after invoking SetInternet2? //M

Dear R users & developers, I coming across the following issue since R 2.15.2 32-bit (running on Windows XP 32.bit; some output left out for conciseness): > setInternet2(TRUE) > require(rJava) > .jinit() > getCRANmirrors() > system("ls" , intern = TRUE) Error in system("ls", intern = TRUE) : CreateThread failed My details are as follows: >

----- Original Message ----- > From: "Duncan Murdoch" <murdoch.duncan at gmail.com> > To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at r-project.org > Sent: Tuesday, March 10, 2015 11:37:12 AM > Subject: Re: [Rd] Notes on building a gcc toolchain for Rtools (but not multilib)

On 10/03/2015 3:17 PM, Duncan Murdoch wrote: > On 10/03/2015 2:56 PM, Dan Tenenbaum wrote: > > > > > > ----- Original Message ----- > >> From: "Duncan Murdoch" <murdoch.duncan at gmail.com> > >> To: "Dan Tenenbaum" <dtenenba at fredhutch.org> > >> Cc: "Hsiu-Khuern Tang" <tangoh at gmail.com>, r-devel at

To whom this may concern, I am having issues installing a program called "SAM" (Statistical Analysis of Microarrays) which is an excel add in and requires the use of R. Due to the firewall at my hospital, R cannot connect to a mirror and therefore cannot install necessary files for the complete installation of SAM. The IT department has asked me which "port" needs to be opened

I am running the following line to download data from the US Energy Information Administration. This function has worked successfully for me in the past but yesterday gave the error/warning messages below. If I simply type "http://ir.eia.gov/wpsr/psw09.xls" (no quotes) into a browser, the file is available to download. I am running R 2.13.0 on Windows XP. # Download File Attempt

Hi, I have two questions: 1) Since I switched to Windows 2007 and downloaded the current R version (2.12.1; 2010-12-16) for Windows 7 a month ago, I cannot down load packages through the GUI drop down menu. I get: Warning: unable to access index for repository http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.12 Warning: unable to access index for repository

Tried several ways to connect to Internet. Perhaps R help could point me in the right direction to make this connection work. setInternet2(use = TRUE) > download.file(" + http://image.shutterstock.com/display_pic_with_logo/322090/322090,1307359665,10/stock-photo-car-silhouette-for-race-sports-design-vector-version-also-available-in-gallery-78667174.jpg + ", +

On Tue, Mar 10, 2015 at 3:17 PM, Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > > That's a bug. I haven't tracked down what's going wrong with our > regular code. If I can't find that and fix it soon, I'll make Internet2 > the default. For now, you can do it yourself using the instructions on > ?setInternet2. > > Duncan Murdoch I

Hola a tod@s! Estoy dando mis primeros pasos con R, y mi objetivo es conseguir descargar tweets de cuentas concretas de twitter. Encontre documentación sobre el package twitteR, y he intentado aplicarlo, pero siempre tengo problemas a la hora de conseguir la autentificación con OAuth. Este es el código que estoy utilizando: options( RCurlOptions = list(verbose = TRUE, proxy =

Hi, I'm new to R. Apologies if this is a simple query, I've searched the mailing lists and docs but can't find a solution to my problem. I'm trying to make some packages available on our intranet. During development the 'intranet' is a webserver running on localhost. * When I call "install.packages" I get a mesage about not being able to access 'index

Hello everyone, I would like to parse very large xml files from MS/MS experiments and create R objects from their content. (By very large, I mean going up to 5-10Gb, although I am using a 'small' 40M file to test my code.) My first attempt at parsing the 40M file, using the XML package, took more than 2200 seconds and left me quite disappointed. I managed to cut that down to around 40

Dear all, Here is my code which am using to combine 5th column from different data sets. Here is the function to do my job genesymbol.append.file <-NULL gene.column <- NULL readGeneSymbol <- function(files,genesymbol.column=5){ for(i in fnames){ temp <- read.table(fnames,header=T,sep="\t",stringsAsFactors=F,quote="\"")

Dear R-developers, I came to a somewhat unexpected behaviour of read.csv() which is trivial but worthwhile to note -- my data involves a protein named "1433E" but to save space I drop the quote so it becomes, Gene,SNP,prot,log10p YWHAE,13:62129097_C_T,1433E,7.35 YWHAE,4:72617557_T_TA,1433E,7.73 Both read.cv() and readr::read_csv() consider prot(ein) name as (possibly confused by

Hi, I have the following data file to be parsed and captured as a data frame: __DATA__ #GDS_ID GENE_NAME GENE_DESCRIPTION GENE_FUNCTION 1007_s_at | DDR1 | discoidin domain receptor tyrosine kinase 1 | protein-coding 1053_at | RFC2 | replication factor C (activator 1) 2, 40kDa | protein-coding 117_at | HSPA6 | heat shock 70kDa protein 6 (HSP70B') | protein-coding __END__ In particular it is

Dear Group, My code stopped working ... used to work till last week! sURL <- "http://www.nseindia.com/content/historical/EQUITIES/2010/NOV/cm01NOV2010bha v.csv.zip" > download.file(sURL,"test.zip") trying URL 'http://www.nseindia.com/content/historical/EQUITIES/2010/NOV/cm01NOV2010bha v.csv.zip' Error in download.file(sURL, "test.zip") : cannot

Hi, I have the following data frame: > print(mydatframe) __DATAFRAME__ V1 V2 V3 1 1007_s_at DDR1 discoidin domain receptor tyrosine kinase 1 2 1053_at RFC2 replication factor C (activator 1) 2, 40kDa 3 117_at HSPA6 heat shock 70kDa protein 6 (HSP70B') __END__ Is there a way to create a hash with V2 as Key and V3 as its value? - Gundala Viswanath Jakarta - Indonesia

Hi.. I am using R as a user, another group built everything I am using. But I need to install some packages and my only internet access is via a web-proxy. I have hunted though the docs and I'm not finding anything on setting a proxy in the package install command. Any help would be really appreciated. Thanks Sue Susan Caskey International Biological Threat Reduction Sandia National

for the script, please kindly see the script below. At line 10 and line 13, my problems occurs. The first one is I try to retrieve the gene official name from a column of a table. The pattern of official name is something starting with gene_name. For detail problems, please see the according lines. Any suggestions are appreciated example of matching source (extract the Nnat, sometime it would

Hi. Please, how can I put together 2 or more lines at the same scatterplot ? Example: measures of protein intake (quantitative) of 4 children over 30 days, by day. How to plot all children at same graphic: Protein X Time ? Is there any command like "overlay" ? Thank you, Mauricio