similar to: sequencing environments

Displaying 20 results from an estimated 30000 matches similar to: "sequencing environments"

2012 Feb 18
1
proto: make a parameter persist
The code below works as expected but: Using the proto package, is this the best way to 1) make a parameter persist if the parameter is passed in with a value, 2) allow for calling the bias() function without a parameter assignment, 3) have the x2 value initialize as 5? Thanks for your feedback. Giving the proto package a test beat and establishing some templates for myself. > oo <-
2011 Aug 23
1
R.oo modify an object inside another classes method
Can someone show me how to modify one (R.oo) class's object inside another (R.oo) class's method? Is that possible with the R.oo package? A quick example or reference to an example would be outstanding... Thanks, Ben [[alternative HTML version deleted]]
2005 Apr 21
3
Objects in R
Hi, A few comments from a fairly experienced R user who worked for several years on a R-based bioinformatics analysis framework. I don't want to misrepresent anyone's views, but... There are real disadvantages to the "objects-as-C-structs" and functions/methods which "mutate" based on argument type. i.e. S4. (1)Novices simply don't understand it.
2005 Jul 15
2
R v2.1.0 patched (>2005-05-09) for Windows?
I'm trying to troubleshoot a case where R crashes on Windows. It does not occur at all with my R v2.1.0 patched (2005-05-09), but happens on R v2.1.1 (patched or non-patched) in many different cases. The R v2.2.0dev (2005-07-15) also got this problem (although it won't crash on the below example). I previously reported this
2011 Aug 08
1
R.oo error upon construction
Hello, Using the R.oo package, how do I throw an error if a field is not present when the user of the class creates the object? Using the example in the R.oo package: setConstructorS3("Person", function(name, age) { if (missing(name)) name <- NA; if (missing(age)) age <- NA; extend(Object(), "Person", .name=name, .age=age ) }) [rest of class methods
2002 Aug 01
6
update() can not find objects (PR#1861)
Full_Name: Yi-Xiong Zhou Version: 1.5.1 OS: win2000pro Submission from: (NULL) (64.169.249.42) Update() can not find objects when it is used in a function, which is in turn being called by another function. Here is a R script to show the problem: ######## begin of the test script ########## fun1 <- function() { x <- matrix(rnorm(500), 20,25) y <- rnorm(20) oo <- lm(y~x)
2006 Jan 22
2
What are the benefits of RoR?
We''ve all seen the productivity benefits of RoR. It would be worthwhile to figure out where they come from. For me, I''d say the following: 1. The number one benefit isn''t from Rails per se, but from Ruby, or any other dynamic OO language (like Python). They avoid the weaknesses of loosely typed, procedural languages like Perl & PHP, but have the swiftness
2010 May 28
2
5.4-->5.5 Upgrade broke OO 3.2.0
In order to get an OpenOffice configuration that is closer in compatibility with MS Office 2007, I removed the standard OO in 5.4 via yum and installed the latest (3.2.0) from OpenOffice.org. Ran that config for many months without a problem. However, when I allowed the upgrade to 5.5, OO broke. I finally had to remove all traces of OO 3.2.0, and start over. That worked...until yum tells me that
2011 Apr 01
1
[LLVMdev] signed/unsigned integers ?
> there is no such information. You can still consider every type to have values > in, say, T = [-2^31; 2^31-1]. Probably you are trying to deduce an interval of > possible values for each register. You will need to allow intervals to wrap > around the end of T since (eg) the basic "add" operator in LLVM uses modulo > arithmetic, i.e. if you add 1 to 2^31-1 you get
2018 Sep 26
2
OpenStack output workflow
Hi, There has been discussion about the OpenStack output and Richard asked for a public thread on this list, so here it is. For v2v from VMware to RHV, there is a Python script that does some extra steps to create the virtual machine after the disks have been converted. We want to have the same behavior for OpenStack, i.e. have virt-v2v create the instance once the volumes have been created.
2019 Sep 19
2
[PATCH] v2v: -o rhv-upload: add -oo rhv-disk-uuid option
This way it is possible to override the UUIDs of the uploaded disks, instead of letting RHV generate them. This can be useful to force certain UUIDs, and to specify the disks in --no-copy mode (which now can be used). --- v2v/output_rhv_upload.ml | 43 ++++++++++++++++++++++++++++++++----- v2v/rhv-upload-plugin.py | 2 ++ v2v/virt-v2v-output-rhv.pod | 23 ++++++++++++++++++++ 3 files
2003 Jul 16
1
Integrating R in OpenOffice
Hi All, A group of about 3-4 of us are looking into the possibility of incorporating R into OpenOffice's (OO) spreadsheet component (sc) . We wish to use OO's nice ODBC ability to query a postgresql-based gene expression database thus populating an OO sc and then use Bioconductor via R to analyse user-selected parts of this spreadsheet. We've looked at and compiled and used
2019 Sep 27
1
[PATCH] v2v: -o rhv-upload: make -oo rhv-cafile optional
It makes little sense to require the oVirt certificate, especially when the verification of the connection (-oo rhv-verifypeer) is disabled by default. The only work done with the certificate in that case is checking that it is a valid certificate file. Hence, make -oo rhv-cafile optional, requiring it only when -oo rhv-verifypeer is enabled. --- v2v/output_rhv_upload.ml | 16
2004 Oct 29
4
Installation problems with R.classes bundle
Firstly hi to everyone on the list, I am new to this list ans also R so please forgive the simplicity of my questions over the next few months. I have version R 1.9.1 and want to perform z-scoring for a benchmarking procedure. I have tried to install Henrik Bengtsson's R.classes bundle (http://www.maths.lth.se/help/R/R.classes). I have downloaded the .zip file and placed the relevant folders
2009 Jun 22
2
negation in grep
Does anybody know how to negate a string in a grep command, i.e., what I need is to return only strings that do NOT contain a second string anywhere in the entire string. for txt <- c("boo","goo","doob","foo","boofoo") I need a grep command that returns strings with "oo" except when "b" is present anywhere. I know that
2009 Jan 30
1
OO programming & S3/S4 paradigm - General question
Hi, Being relatively new to OO programming and not so old on R, I noticed the possibility to do OO programming in R. But it seems there is two "paradigms" S3 that seems the old one but is the one used in the R.oo package and S4 which seems more recent As a starting point, which one is best to use? Is R.oo useful? what are the main difference between the two? Any feedback
2003 Mar 15
1
File locking with different (client) platforms
I have a problem with file locking on different platforms. System environment: Samba Server 2.2.3.a on Red Hat 7.3 Some Windows 2000 Clients with MS-Office 2000 and OpenOffice 1.0.1 Some Red Hat 8.0 Clients with Open Office 1.0.1 The Linux Clients mounts the Samba Shares with smbmount: smbmount //<Server/shares> $HOME/path -o
2010 Jan 20
1
R.oo installation warnings?
I got the following warnings when I install R.oo. Are these warnings normal? Should I reinstall the package as mentioned in the warnings? How to reinstall? The sessionInfo() is at the end. > install.packages("R.oo", dependencies=T) Warning in install.packages("R.oo", dependencies = T) : argument 'lib' is missing: using '/utility/R' also installing the
2019 Sep 19
1
Re: [PATCH] v2v: -o rhv-upload: add -oo rhv-disk-uuid option
On Thursday, 19 September 2019 13:16:01 CEST Martin Kletzander wrote: > On Thu, Sep 19, 2019 at 12:38:41PM +0200, Pino Toscano wrote: > >This way it is possible to override the UUIDs of the uploaded disks, > >instead of letting RHV generate them. > > > >This can be useful to force certain UUIDs, and to specify the disks in > >--no-copy mode (which now can be used).
2011 Nov 08
2
multi-line query
Hello, I'm using package RpgSQL. Is there a better way to create a multi-line query/character string? I'm looking for less to type and readability. This is not very readable for large queries: s <- 'create table r.BOD("id" int primary key,"name" varchar(12))' I write a lot of code, so I'm looking to type less than this, but it is more readable from