similar to: Error in Rd[[which]] : subscript out of bounds

I'm getting the following form R CMD CHECK mypackage ----------- * checking Rd files ... WARNING Error in Rd[[which]] : subscript out of bounds problem found in ?myfunction.Rd? --------- This is... not the most helpful error. I'd be happy to make a minimal .Rd example file if someone can point me to what a minimal .Rd file has in it. The file is already pretty minimal, so it's

Hi, I have a trouble trying to use \href in a rd doc. See example below: \references{ \href{http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2702787/}{Vaniscotte A., Pleydell D., Raoul F., Quere J.P., Coeurdassier M., Delattre P., Li T., Qian W., Takahashi K., Weidmann J.C., Qiu J., Giraudoux P. 2009 Modelling and spatial discrimination of small mammal assemblages: an example from western

I work with Windows, R version 2.4.1 I'm trying to do a discriminant analysis and, in trying to figure out how to do it following the example from R help, I'm getting an error that says 'subscript out of bounds'. I don't know what this means and how to solve it (I'm very new with R) I'm doing everything in this made-up test matrix: group var1 var2 var3 1 1

Dear developers, I came across with a bug while parsing Rd files. Given is the following minimal Rd file: ---- \name{foo} \title{foo} \description{ #ifdef windows win #endifd #ifdef unix unix #endif } ---- By accident I have a typo at line 6, instead of having #endif I typed #endifd. If I run checkRd(), parse_Rd(), Rd2HTML(), or others including the command line "R CMD Rconv" R

Hello Using R Version 2.3.1 I have setup a cronjob to update packages, which worked successfully almost a year (it was called daily). Basically, it runs like this: Sys.getenv("http_proxy") update.packages(ask=F,repos="http://cran.r-project.org") (the http_proxy environment variable is set prior to the call). All of a sudden, I started to get this error: Error in

Hi, I came across the following warning in R CMD check (it only occurred on Windows): The \usage entries for S3 methods should use the \method markup and not > their full name. > See the chapter 'Writing R documentation files' in manual 'Writing R > Extensions'. The package I'm looking at is one that I did not write which has 34 .Rd files. This warning does not

On Thu, Jul 12, 2018 at 12:23 PM Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > > On 12/07/2018 6:33 AM, G?bor Cs?rdi wrote: > > I would like to create \examples{} in the manual dynamically, and > > while it is possible to do this with a \Sexpr at the top level, R CMD > > check issues a warning for it. (See below.) > > > > Is it intentional that

On 12/07/2018 9:46 AM, G?bor Cs?rdi wrote: > On Thu, Jul 12, 2018 at 2:30 PM G?bor Cs?rdi <csardi.gabor at gmail.com> wrote: >> >> On Thu, Jul 12, 2018 at 2:21 PM Duncan Murdoch <murdoch.duncan at gmail.com> wrote: >>> I think I found the bug. The tools::checkRd function only processes >>> \Sexpr's with "stage=render". I think the author

On Thu, Jul 12, 2018 at 2:21 PM Duncan Murdoch <murdoch.duncan at gmail.com> wrote: > I think I found the bug. The tools::checkRd function only processes > \Sexpr's with "stage=render". I think the author (who might have been > me, I forget) assumed that would imply all the earlier stages as well, > but apparently it doesn't. > > So you could use that as

Hi again, On Tue, 2010-06-22 at 10:02 +0200, Steffen Neumann wrote: > So, if XMLSchema:::processSchemaTypes() does not find > any custom/embedded type definitions, is it possibe to "inject" those > from the http://www.w3.org/2001/XMLSchema.xsd > into genSOAPClientInterface() instead ? Well, it's not possible, at least for me. This is as far as I got, any help

Hi All, Apologies if this is a very naive question. Is there a way to see the particular Rd file being processed right before a warning/error occurs? As far as I can tell, all my .Rd files use have names and titles and they are unique between Rd files (sometimes in a file I use something like \name{foo} \title{Foo}). I seem to be able to convert files to latex using: R CMD Rdconv --type=latex

Hi, I am trying to create a BioMoby client in R using SSOAP. BioMoby is a normal SOAP web service, with request and response messages wrapped in BioMoby XML dialect. Since the particular WSDL I am having problems with is autogenerated and used similarly by *many* services, it would be quite important to a) fix SSOAP or b) fix the WSDL generator. I am a bit lost how to continue debugging

Having a classification problem, I am using SVM for prediction in R. In dataset, there are integer as well as categorical variables. I got error while predicting with predict method. svp3c <- ksvm(input_dataset3$isCRgt3~., data=input_dataset3,type="C-svc") p3<-predict(svp3c,newdata=input_dataset_prediction[,-1],type="response") error :: Error in

I'm trying to fit a naive Bayes model and predict on a new data set using the functions naivebayes and predict (package = e1071). R version 2.5.1 on a Linux machine My data set looks like this. "class" is the response and k1 - k3 are the independent variables. All of them are factors. The response has 52 levels and k1 - k3 have 2-6 levels. I have about 9,300 independent variables

Hey, I keep getting the following warning: > data(GSE19829-GPL570_eset) Warning in data(GSE19829 - GPL570_eset) : data set ‘GSE19829 - GPL570_eset’ not found > ## maybe str(GSE19829-GPL570_eset) ; plot(GSE19829-GPL570_eset) ... > > if(require(affy)){ + summary(GSE19829-GPL570_eset$vital_status) + } Error in summary(GSE19829 - GPL570_eset$vital_status) : object

The build system rolled up R-4.4.0.tar.gz and R-4.4.0.tar.xz (codename "Puppy Cup") this morning. This is a major update, containing many new features and bug fixes. The list below details the changes in this release. You can get the source code from https://cran.r-project.org/src/base/R-4/R-4.4.0.tar.gz https://cran.r-project.org/src/base/R-4/R-4.4.0.tar.xz or wait for it to be

The build system rolled up R-4.4.0.tar.gz and R-4.4.0.tar.xz (codename "Puppy Cup") this morning. This is a major update, containing many new features and bug fixes. The list below details the changes in this release. You can get the source code from https://cran.r-project.org/src/base/R-4/R-4.4.0.tar.gz https://cran.r-project.org/src/base/R-4/R-4.4.0.tar.xz or wait for it to be

Hello, Here's an example that renders correctly using Rd2txt / Rd2latex / R CMD Rd2pdf, but has problems under Rd2HTML: \name{foo} \title{foo} \section{foo}{ This should be on a separate paragraph This should be on a separate paragraph This should be on a separate paragraph \Sexpr[stage=render,results=rd]{ paste( rep('Sexpr: This should be on a separate

Hi, Could you please tell me how I correct the following error message? “Error in object$tables[[v]] : subscript out of bounds” This is the code: library(e1071) data(iris) attach(iris) class_label <- names(iris)[1] myformula <- formula(paste(class_label,"~ .")) mymodel<-naiveBayes(myformula, iris,cross=3) predict(mymodel,iris) ##Error in object$tables[[v]] :

Hi I am running a simulation that involves a loop calling three 2 functions that I have written. Everything works fine when the inside of the loop is performed up to 1000 times (for (i in 1:750)). However, I sometimes get : ''Error: subscript out of bounds'' if I try to increase the loop 'size' to 1000. I am thinking it has to to with memory but I am not sure. I have