similar to: How do I get the CEM (coarsened exact matching) package to run?

Hello, I'm trying to install KEGGSOAP with bioconductor but i'm facing this problem: /> biocLite("KEGGSOAP") BioC_mirror: http://bioconductor.org Using R version 2.15, BiocInstaller version 1.4.4. Installing package(s) 'KEGGSOAP' trying URL 'http://www.bioconductor.org/packages/2.10/bioc/src/contrib/KEGGSOAP_1.30.0.tar.gz' Content type

Hi, I have some surprising trouble installing the gputools package. This is a linux box running Fedora with an Nvidia GeForce GTX 260 card and R 2.12.1 I had gputools running on it for the past several months. Wanting to update to the newest version, I simply executed install.packages("gputools") from within R. This should mean that the problem isn't in the hardware or OS. Errors

Hi, I downloaded 2.8.1 and tried to compile it using gcc 3.4.6. (simple install, just ./configure, make, make check, make install) I found that it compiled and went through the tests fine. The foreign library, however, that seems to be segfaulting on me (see output below). I did see an old posting about a similar problem, but there was no resolution. Have other people experienced this at all?

Thanks for the report, but unfortunately I cannot reproduce on my system (either macOS nor Linux, from the command line) to debug. Did you run this in the command line version of R? I would not be surprised to see such a crash if executed from a multi-threaded application, say from some GUI or frontend that runs multiple threads, or from some other R session where a third party library

This code actually happens to work for me on macOS, but I think in general you cannot rely on performing HTTP requests in fork clusters, i.e. with mclapply(). Fork clusters create worker processes by forking the R process and then _not_ executing another R binary. (Which is often convenient, because the new processes will inherit the memory image of the parent process.) Fork without exec is not

R Help List: Just curious if anyone has successfully built R on a SPARC platform running Sun Solaris 10 using the latest Sun Studio 12 set of compilers. If so, I would be interested in the compile flags that you used. I have tried several different builds of version 2.5.1, 2.6.0, and 2.6.1 using various different compile flags and I am able to compile and check, but for whatever reason, the

Hello all, (Thank for your reply) I have a web-application in Apache Tomcat, when i start R in this application, I used packe RSJava Code ROmegahatInterpreter interp; String [] rargs = {"--no-save"}; REvaluator e; interp = new ROmegahatInterpreter ( ROmegahatInterpreter.fixArgs(rargs),false ); e =new REvaluator (); Errors ================ R version 2.10.1 (2009-12-14)

Dear R List, I encountered a serious problem regarding the registration of ".C" when following the documentation "Writing R Extensions" that leads to a segmentation fault (tested on windows and mac os x). The registration mechanism for ".C" routines via R_registerRoutines and the R_CMethodDef structure has been enhanced recently with the addition of two fields, one

I recently noticed a change between R-3.3.3 and R-3.4.0 in the definition of the R_CMethodDef struct. typedef struct { const char *name; DL_FUNC fun; int numArgs; - R_NativePrimitiveArgType *types; - R_NativeArgStyle *styles; - } R_CMethodDef; I suspect this is the reason that packages installed by R-3.4.0 and loaded into R-3.3.3 will crash the

I have an R program I am attempting to use to generate some SVGs. I've been using the cairoDevice library. When running a session not connected to an X session (like if I'm sshed in), attempting "library(cairoDevice)" causes: *** caught segfault *** address 0x8, cause 'memory not mapped' Traceback: 1: .C("R_gtk_setEventHandler", PACKAGE =

Hello, I try to install pbdMPI. Compilation successful, but load fails with segfault. Is anyone can help me? R version 3.0.0 pbdMPI version 0.1-6 Intel compiler version 13.1.1 OpenMPI version 1.6.4-1 CPU Intel x86_64 # R CMD INSTALL pbdMPI_0.1-6.tar.gz .. .... checking for gcc... icc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name...

Hi all, I'm trying to use the package read.table within a foreach loop. I'm grabbing 500M rows of data at a time from two different files and then doing an aggregate/tapply like function in read.table after that. I had planned on doing a foreach loop 39 times at once for the 39 files I have, but obviously that won't work until I figure out why the segfault is occurring. The

I have an lapply function call that I want to parallelize. Below is a very simplified version of the code: url_base <- "https://cloud.r-project.org/src/contrib/" files <- c("A3_1.0.0.tar.gz", "ABC.RAP_0.9.0.tar.gz") res <- parallel::mclapply(files, function(s) download.file(paste0(url_base, s), s)) Instead of download a couple of files in parallel, I get a

Dear R community, I am using the R package `interval` in order to perform some modelling tests of the NPMLE convergence in the case of censoring. So all I am doing is drawing a sample from exponential distribution, making it a censored sample and computing the NPMLE of its distribution function. But when run on Linux Calculate 10.4 the program keeps crashing and reporting a segmentation fault

I am having difficulty installing the arm package and would be grateful if anyone could give some advice. I have updated my computer to a Mac OS X version 10.5.5 ( processor: 2 x 2.8 GHz Quad-Core Intel Xeon) and I have downloaded R version 2.8.0 I have downloaded the package arm, but when i try to install it, the following message is given in R: Loading required package: MASS Loading

In session of R, occour following bug's in de (data.entry) function. *** caught segfault *** address 0x2c, cause 'memory not mapped' Traceback: 1: dataentry(odata, as.list(Modes)) 2: de(..., Modes = Modes, Names = Names) 3: data.entry(posto, fecha, serie = registros, status) 4: onEditaSerie(serie, "serie") 5: function () serie <- onEditaSerie(serie,

I was experimenting with Rexcelpoi from Armstrong Whit. I was able to compile the package in my Redhat linux machine with a few warnings but no errors. I was not able to get the package built on my windows xp computer, but that is for another post. I load R on the linux computer and type in the library call to Rexcelpoi the receive the following error. library(Rexcelpoi) *** caught

Hello, I am trying to use R for propensity score matching in SPSS.? I have version 21 of SPSS and I downloaded R 2.14.2 as directed as well as the R Essentials plug-in.? I have run a test for R and it appears to be running correctly.? I then downloaded psmatching3 and have tried to use the PS matching dialog in SPSS.? However, I continue to run into problems as SPSS reports that there is no

I got the following after running succesfully through this loop 28 million times... the loop opens text files in a directory and inserts line by line into a database... *** caught segfault *** address 0xc0000010, cause 'memory not mapped' Traceback: 1: .getGeneric(f, where, package) 2: getGeneric("coerce", where = where) 3: as(obj, "integer") 4:

Dear list. Has anybody had any issues with ROracle, namely consistently leading to a segmentation fault? One of our oracle databases seems to have certain issues at the moment (do not know what exactly though) and if that one is queried ROracle definitely fails with a segmentation fault. Any ideas? Here is the trace and below is also a type of query that crashes it: *** caught segfault ***