similar to: [newbie] pager for large matrix?

How to programmatically (i.e., without no or minimal handcoding) copy a netCDF file? (Without calling > system("cp whatever wherever") :-) Why I ask: I need to "do surgery" on a large netCDF file (technically an I/O API file which uses netCDF). My group believes a data-assimilation error caused a data variable to be corrupted in a certain way, so I'm going to

Should one ask questions relating to the R package 'ncdf' here? or look for a more netCDF-oriented (but probably less R-oriented) list? Why I ask: I'm relatively new to R, which I've only used in the past for graphics. I'm trying to learn R as an alternative to manipulating netCDF files with NCO (which works well but lacks all the other R goodnesses). Hence I've got a

From: Matt Fleming <matt.fleming at linux.intel.com> The usage of open_file() is wrong in core/fs/pxe/pxe.c. Any non-negative return value indicates success, not just a return value of zero. This bug was introduced in commit ba4fefa9b52b "core: change load_config() to open_config()". The bug causes pxelinux to fail to open configuration files. Signed-off-by: Matt Fleming

I would appreciate * guidance regarding translation of IDL routines to R, generally * assistance translating two IDL routines to R, specifically Why I ask: I'm slowly learning how to do atmospheric modeling. One language that has been been popular in this space is IDL http://en.wikipedia.org/wiki/IDL_(programming_language) which unfortunately is proprietary (not to mention butt-ugly, IMHO

Hi, I see there are some previous threads on gnuclient.exe, but I can't figure this out based on those... I recently started using ESS with Xemacs. I'm on Windows XP. On starting iESS, my editor gets set to 'gnuclient.exe'. I don't understand how this works, since there is no executable anywhere on my machine called "gnuclient.exe". But I have no complaints: I like

How best to implement a decorator pattern in R? What I mean, why I ask: A group of ncdf4 users is trying to make it easier (notably for ourselves :-) to write correctly IOAPI-formatted netCDF. Since IOAPI http://www.baronams.com/products/ioapi/ decorates netCDF, one obvious way to do a package=ioapi is to decorate the netCDF API from package=ncdf4. E.g., to add a data variable (datavar) with

Hi All, i'm on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz *

Hi All, i'm on a debian linux 64bit, i'm tying to install the netcdf intraface, i tried both ncdf and ncdf4 but trying to build i received the error : (i have necdf installed on my machine and it is able to fiund it .. no missed .h) epy at epinux:~$ sudo R CMD INSTALL --configure-args="-with-netcdf_incdir=/usr/include -with-netcdf_libdir=/usr/lib" ncdf4_1.8.tar.gz *

Dear all, I am attempting to convert 10 NetCDF files into a single NetCDF file, due to the data input requirements of a model I hope to use. I am using the ncdf package, version 1.6. The data are global-scale water values, on a monthly basis for 10 years (ie. 120 months of data in total; at present the data are separated by year, with 12 months of data in each file - mrunoff_1986 through to

Dear all, I am attempting to convert 10 NetCDF files into a single NetCDF file, due to the data input requirements of a model I hope to use. I am using the ncdf package, version 1.6. The data are global-scale water values, on a monthly basis for 10 years (ie. 120 months of data in total; at present the data are separated by year, with 12 months of data in each file - mrunoff_1986 through to

Friends, I tried to install ncdf package in ubuntu with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include -with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz The installation was stopped throwing the following error. I tried to google it but didnt find any solution. someone kindly write me what is going wrong. **

Dear all, Can anybody tell me how to export a 3d figure made with the plot3d function? I'm careless about whether it's still interactive or not in another format, as long I can get it out of R. Thanks! Alejandro Gonz?lez Departamento de Biodiversidad y Conservaci?n Real Jard?n Bot?nico Consejo Superior de Investigaciones Cient?ficas Claudio Moyano, 1 28014 Madrid, Spain Tel +0034

Redhat's Security Enhanced Linux (in some modes) generates messages like that when code in a shared library is not compiled to have position independent code. I.e., the -fpic or -fPIC flag was not supplied when compiling. Your build log showed that -fpic was used when compiling your code, but the 3rd party library, libnetcdf.a may not have been compiled this way. The command

Hi, I'm using the "ncdf" library for creating ncdf files. But I need to create about 100 variables per file (e.g. single rivers), So I do not like to create each variable separately. Unfortunately I found no way to make this work, as I'm unable to create a correct list of class "var.ncdf". ###code piece river=list(mode='var.ncdf', length=nriv)

I would like to open an existing netCDF file and add a variable to it. I am using the ncdf package. This test code gives the idea of what I am trying to do: library(ncdf) print('here we go') print('first, construct netCDF file') t<-dim.def.ncdf('t','',1:1,unlim=T,create_dimvar=F) print('defining first vars')

Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc

I am trying to create a NetCDF file with bathymetry (a matrix) and then to add a grid type (an integer) as variables. This is the relevant part of the code: library(ncdf) wfile="my_file.nc" msv=-10 grdtp=2 # Dimensions d1=dim.def.ncdf("lon","degrees",as.double(lon)) d2=dim.def.ncdf("lat","degrees",as.double(lat)) # Variables

Hi everyone, I am a newbie in R and in this discussion list. I am trying to use R package "ncdf" to read values of temperature from a NCDF file. I did it before to another file using the function "get.var.ncdf", but now there is an error that I can not solve, and I would really appreciate if you could help me. I am using R version 2.11.1 (2010-05-31) in a machine with Linux

Dear all, working with R under Linux, I am not able to install the ncdf-package. The following appears: install.packages("ncdf") Warnung in install.packages("ncdf") : argument 'lib' is missing: using '/user/silke/R/x86_64-unknown-linux-gnu-library/2.6' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done versuche URL

Dear CSAG R users, I will be glad if someone can point out what I am doing wrong or not doing at all in this. I am trying to write out netcdf file in R. I have 26 time step but only the first time step is written. For example: >library(ncdf) >path <- '/home/work/' >forecast <- open.ncdf(paste(path,'cam.1980.2005.nc',sep="")) > fore <-