similar to: Reading mcmc/coda into a big.matrix efficiently

I'm currently using JAGS as my Bayesian program of choice due to working off of an older mac running OSX. I'd like to utilize some of the functions from R2WinBUGS, however. As such, I'm attempting to write something to go from coda output dumped by JAGS into the bugs object format - I've looked for functions that will convert from an mcmc object to a bugs object, but

I've exactly the same problem. My config looks similar to yours: 1 samba as wins server (wins support=yes" on one segment, 1 samba as "wins server client" (wins server = xxx). The "wins server client" never discards machines from segment 1. I looked at the browse.dat and the wins.dat on the server on segment 1. There are no entries of the shutdowned maschines. Only in

Just while I use R2Winbugs, the following error will be presented. Please tell me how to cope with. Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' in: file(file, "r") -- View this message in context:

Hello, we are using "samba-2.0.6" (running on linux-2.2.14 machine). On our client machines we use "Windows 9x". There are 2 network segments: Segment 1 (192.168.1.0): - 13 Win95 client machines - 1 samba-2.0.6 server ("fsa01") which is WINS, DMB and LMB in its network segment (192.168.1.0). This samba is also the login server for our Win9x clients. Segment 2

Hi R-Help! I am trying to use R2WinBUGS but I get the following error message in WinBUGS (and there must be something wrong with my R statement as I tried it directly in WinBUGS and it worked): display(log) check(C:/Documents and Settings/Daikon/Roche/pop_model.txt) model is syntactically correct data(C:/Documents and Settings/Daikon/Roche/data.txt) expected key word structure compile(7) ...(and

This is somewhat a summary/continuation of an R bug report: (https://bugs.r-project.org/bugzilla3/show_bug.cgi?id=14645) Illumina's cluster definition files (*.egt) are one of the proprietary and undocumented file formats used by their GenomeStudio line of products for genomic studies. snpMatrix 1.17.0.7 onwards (http://sourceforge.net/projects/outmodedbonsai/files/snpMatrix%20next/)

Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' I'm using R 2.2.1 and WinBUGS 1.4.1 on a windows machine (XP). My R code and WinBUGS code is

Dear all, I am looking for help in programming three functions. Those functions should simulate (social) networks according to the process described in : (1) A.H. Dekker - "Realistic Social Networks for Simulation using Network Rewiring" ( http://www.mssanz.org.au/MODSIM07/papers/13_s20/RealisticSocial_s20_Dekker_.pdf ) (2) Konstantin Klemm and V?ctor M. Egu?luz - "Growing

Dear all, I am looking for help in programming three functions. Those functions should simulate (social) networks according to the process described in : (1) A.H. Dekker - "Realistic Social Networks for Simulation using Network Rewiring" ( http://www.mssanz.org.au/MODSIM07/papers/13_s20/RealisticSocial_s20_Dekker_.pdf ) (2) Konstantin Klemm and V?ctor M. Egu?luz - "Growing

Dear R-help, I'm using the R2WinBUGS package and getting an error message: Error in file(file, "r") : unable to open connection In addition: Warning message: cannot open file 'codaIndex.txt', reason 'No such file or directory' I'm using R 2.2.1 and WinBUGS 1.4.1 on a windows machine (XP). My R code and WinBUGS code is given below.

?Order watches, bags here- http://goo.gl/tFhuvb tkhlc xd anmw f plmi tcul o e xuz on rq nbkbs bhcv zkkwb b ozhkp h b givcc jm birjv bbdvf ek wgo bgyt buf yw e g qzby wbexd vevwm pnb c p azugj hlk ieyan pj rc yzcx drqxe mcrcj xlo bnkpt in pw wzurk n ycct tz kt hwsjt nkg jln wocia rh vkt lzn co sjhnr ic c crdz ssh cs vz ddpl hwgmh adtcn trf iv as asbp xmcp moho yo jegpk bj bui x c ddz

I just received the following letter: Date: Sun, 24 Jan 1999 04:01:55 -0500 (EST) From: John Stange <building@cs.umd.edu> Subject: util-linux compromised? I grabbed util-linux-2.9g yesterday from win.tue.nl, and discovered a section of login.c that appears to send the host and uid of the user to a hotmail address. I imagine this isn't a standard feature. :>

Hi Friends.. Well, I have setting OpenLDAP on CentOS 4.4 on a Blade Server.. I am trying of setting a cluster.. But I don't know that use: NFS or CODA.. What is you opinion? -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20070206/62c12ffa/attachment.html>

Hi all: The CODA package provides Geweke Diagnostic method for convergence checking. The geweke.diag in CODA returns Z-score value but not give a conclustion that it is convergence or not. So I'd like to know how small/big the magnitude of Z-score is corresponding to the convergence of a chain. That is, Doese Z-score smaller or more than *threshold *determine the convergence? If so, how big

Hi R users, Does anybody knows for the following erro after running geweke.diag(MCMC.sampled, frac1=0.1, frac2=0.5) Erro em glm.fit(x = X, y = Y, weights = weights, start = start, etastart = etastart, : la??o interno 1; n??o ?? poss??vel corrigir o tamanho do passo Al??m disso: Warning messages: 1: algoritmo n??o convergiu in: glm.fit(x = X, y = Y, weights = weights, start = start,

I have just uploaded the R port of the CODA (Convergence Diagnostics and Output Analysis) package to CRAN. This is a suite of functions for analyzing the output of Markov Chain Monte Carlo simulations and diagnosing lack of convergence of the simulated output. It is designed to work with (but is not necessarily limited to) the BUGS program: http://www.mrc-bsu.cam.ac.uk/bugs/ I have made

I have just uploaded the R port of the CODA (Convergence Diagnostics and Output Analysis) package to CRAN. This is a suite of functions for analyzing the output of Markov Chain Monte Carlo simulations and diagnosing lack of convergence of the simulated output. It is designed to work with (but is not necessarily limited to) the BUGS program: http://www.mrc-bsu.cam.ac.uk/bugs/ I have made

Dear all, I just wrote a script to have each of my three mcmc chins running on a different computer core to improve computation speed. To do it I use the function sfLapply from the package snowfall. Before using parallell computation, I did my diagnostic analyses just after the model updating, but now I have to save the coda before. Using the CODA package, it is possible to load the outputs in a

Hi, I've got a linear mixed model created using lmer: A6mlm <- lmer(Score ~ division + (1|school), data=Age6m) (To those of you to whom this model looks familiar, thanks for your patience with this & my other questions.) Anyway, I was trying this to look at the significance of my fixed effects: A6post <- mcmcsamp(A6mlm, 50000) library(coda) HPDinterval(A6post) ..but I got this

I tried calculating pD as 1/2 variance of the deviance, but I got hugely inflated numbers. Does anybody know how to calculate pD from the coda files output from R2WinBUGS? By the way, 'set DIC' is greyed out for some reason within WinBUGS, so I can't monitor DIC. [[alternative HTML version deleted]]