similar to: Is there a way force hiding of all messages when calling library()?

I am getting the above warning following loading of Geneland 3.1.5 on unix , while a simple plot sends output to the pdf file ( see attached code) no output results from Geneland functions, resulting in empty pdf files > library (Geneland) Loading required package: RandomFields Loading required package: fields Loading required package: spam Package 'spam' is loaded. Spam version

I am receiving the above error ( full r session output below) the script runs OK in windows. and "genotypes" and "ploidy" are both correct arguments any suggestions would be most welcome Nevil Amos MERG/ACB Monash University School of Biological Sciences > library(Geneland) Loading required package: RandomFields Loading required package: fields Loading required

Hi all, I have a pretty basic question about categorical variables but I can't seem to be able to find answer so I am hoping someone here can help. I found that if the factor names are all in numbers, fitting the model in lm would return labels that are not very recognizable. # Example: let's just assume that we want to fit this model fit <- lm(height ~ age + Seed,

Hi all, I had a weird problem with xyplot and I am wondering if anyone can help me figure out what's wrong here. Basically if I call xyplot() inside a function and I call quartz() after, then the previous xyplot() does not do anything. A short demo of the issue is like this: library(lattice) plot.trends <- function() { mat <- data.frame(cbind(rnorm(100), rnorm(100))) names(mat)

I'm trying to read data a program produces in matrixmarket array format into R and its giving me fits. I've tried read.MM (below) and readMM (from the Matrix package) but neither works. One of them says array format isn't supported, the other reports something indecipherable about Fortran. Here's the file contents. Can't get much simpler than that! %%MatrixMarket matrix array

Hi I'm trying to use ouch's hansen and brown functions but I get the error: > brown(logflatnodes,archotreeouch) Error in backsolve(l, x, k = k, upper.tri = upper.tri, transpose = transpose) : NA/NaN/Inf in foreign function call (arg 1) and with hansen also: Error in optim(par = c(sqrt.alpha, sigma), fn = function(par) { : function cannot be evaluated at initial parameters

I get the following error from one of my Rd files in R CMD check (R 2-14.0) * checking Rd files ... WARNING Error in switch(attr(block, "Rd_tag"), TEXT = if (!grepl("^[[:space:]]* $", : EXPR must be a length 1 vector problem found in ?backsolve.Rd? This is likely something that will be glaringly obvious once it's pointed out, but without a line number I can't

Hi, It seems like a number of people on this list can install rgl but have problem loading it. I found myself in the same situation too. I have tried the workaround of removing /usr/X11R6/lib from DYLD_LIBRARY_PATH, but it doesn't seem to work for me, I am still getting the same error (that everyone else seems to get). Can anyone give me some ideas on what else to try? I have Mac OS 10.3.5,

>>>>> "JonR" == Jonathan Rougier <J.C.Rougier@durham.ac.uk> writes: JonR> ... By the way, I have `solve' JonR> methods for triangular matrices and variance matrices -- would JonR> you be interested? { Jonathan, I hope it's okay if I CC this to R-devel; this must be of a wider interest } Ye.e..s; for triangular ones,

I cleaned up my old benchmarking code and added checks for missing data to compare various ways of finding OLS regression coefficients. I thought I would share this for others. the long and short of it is that I would recommend ols.crossprod = function (y, x) { x <- as.matrix(x) ok <- (!is.na(y))&(!is.na(rowSums(x))) y <- y[ok]; x

Dear Sir, Hello, My name is kenneth Yeung. I wonder to know how to configure samba or window to access samba folder without login prompt. ! I am using Wins 2K for client, and Linux server is set samba server. I can login to samba using username and password, but I want to do a windows backup schedule task without prompt. login window ! Could you tell me the method to do this task. Thank you for

Just wondering if there's an R package which does tricks similar to what TK!Solver does. TK!Solver, for those not lucky enough to have found it, basically allows one to define a bunch of equations, assign values to an arbitrary subset of the variables, from which it calculates (either directly when possible or back-solving when not) the values of the other variable(s). thanks Carl

summary: e.g., how to replace '<query R for package=package_name>' in the following: for RSERVER in 'foo' 'bar' 'baz' ; do ssh ${RSERVER} '<query R for package=package_name>' done or is there a better way to script checking for an R package? details: For my work I need a few non-standard R packages. I do that work on 2 clusters. One uses

I just did a gem update and it broke my rails application. I had to go back to 2.0.2, because 2.0.2.9129 produces this error on Mac OS X Leopard: /Users/nicholas/RubyDev/dummy/config/environment.rb:38: undefined method `time_zone='' for #<Rails::Configuration:0x12c9f24> (NoMethodError) from /Library/Ruby/Gems/1.8/gems/rails-2.0.2/lib/initializer.rb:47:in `run'' from

Hi, I am wondering if it is possible to view the Fortran source code called by R functions. In particular, I am interested in the "leaps.setup" function in a package called "leaps", which calls Fortran functions "ssleaps", "initr" etc. Any help would be greatly appreciated. Ka Yee Yeung Bioinformatics Scientist Dept of Microbiology University of

Hi the manpage says that crossprod(x,y) is formally equivalent to, but faster than, the call 't(x) %*% y'. I have a vector 'a' and a matrix 'A', and need to evaluate 't(a) %*% A %*% a' many many times, and performance is becoming crucial. With f1 <- function(a,X){ ignore <- t(a) %*% X %*% a } f2 <- function(a,X){ ignore <-

Hallo to everybody out there, I have downloaded and compiled Samba3b2 on a SuSE 8.2 machine. For testing purpose, I connect to this machine with a Win2k-Box ... most things seem to work fine, but I am unable so change passwords from the win-box with unix password sync enanbled. I changed loglevel to 103 and enabled password chat debug. From what I found in the log-files, I can conclude that

I'm hoping that someone with deeper insight into S4 than I, that is to say virtually everyone reading this list, could help resolve the following problem in SparseM. We have setGeneric("backsolve", function(r, x, k = NULL, upper.tri = NULL, transpose = NULL, twice = TRUE, ...) standardGeneric("backsolve"), useAsDefault= function(r, x,

I finally got Samba-3.0beta1 as PDC with LDAP backend. However, I need to specify: passdb backend = ldapsam smbpasswd:smbpasswd guest and have the root account's exists in smbpasswd file. I still could not get a uid=root entry in LDAP to allow client workstation to join the domain. When in samba-2.2.8a I could use a fake rid=506 with uidNumber=0 entry in LDAP (as a SambaAccount) and it

Hello, I try to install pbdMPI. Compilation successful, but load fails with segfault. Is anyone can help me? R version 3.0.0 pbdMPI version 0.1-6 Intel compiler version 13.1.1 OpenMPI version 1.6.4-1 CPU Intel x86_64 # R CMD INSTALL pbdMPI_0.1-6.tar.gz .. .... checking for gcc... icc -std=gnu99 checking whether the C compiler works... yes checking for C compiler default output file name...