similar to: Hw to upgrade CTDB ?

Dear all, I am trying to create a consensus skyline plot using the "ape" package(newbie). I have a nexus file that looks like the one from above containing many trees. (my_file.trees) #NEXUS begin trees; [Treefile generated by sim_coal.exe (Laurent Excoffier)] tree true_tree_1 = [&U] (((13.1:6, 43.1:5):12, 28.1:14):284, (((((21.1:0, (20.1:1, 4.1:0):0):1, ((37.1:0,

Estimada comunidad tengo un problema del que no encuentro datos que me ayuden mucho en la web. Estoy haciendo calculos por grupos con data,table. Tengo un archivo (zp.res) con tres columnas que clasifican los datos (sol, con, dia) y una columna de datos numericos (media), de la siguiente forma: sol con dia media 1: con 0 1 -22.6 2: con 0 1 -36.6 3: con 0 1 -35.6 y

Hi, I have generated a skyline plot of a tree in newick format using "ape". How can I plot the error bars for this graph? I only have the the tree data. un<-"((((8.1:0, 20.1:0):0, 6.1:3):123, (((((35.1:0, (22.1:0, (43.1:1, 29.1:0):0):0):4, 25.1:6):0, ((42.1:0, 21.1:0):3, (39.1:0, 2.1:0):3):1):8, (3.1:0, 7.1:0):8):48, (((((15.1:0, 14.1:0):0, 11.1:0):0, 37.1:0):0,

Colleagues, I am fitting an Emax model using nls. The code is: START <- list(EMAX=INITEMAX, EFFECT=INITEFFECT, C50=INITC50) CONTROL <- list(maxiter=1000, warnOnly=T) #FORMULA <- as.formula(YVAR ~ EMAX - EFFECT * XVAR^GAMMA / (XVAR^GAMMA + C50^GAMMA)) ## alternate version of formula FORMULA <- as.formula(YVAR ~ EMAX - EFFECT / (1 + (C50/XVAR)^GAMMA)) FIT <-

Dear friends, when i use glm() to fit my data, i use glm(formula = snail ~ vegtype + mhveg + humidity + elevation + soiltem, *family = Gamma(link = inverse),* data =a,)) It shows: error in eval(expr, envir, enclos) : *gamma distribution don't allow negative value*. But i use result<-glm(formula = snail ~ vegtype + mhveg + humidity + elevation + soiltem, family = poisson, data =a) #this

Dear all, Does anyone know how can one loop through the newick phylogenetic trees stored in a nexus file and generate an "average" skyline plot with coalescent intervals? I have managed to generate the plot with one tree, but is it possible to create that "consensus/average" plot in R? tr<-"((((8.1:0, 20.1:0):0, 6.1:3):123, (((((35.1:0, (22.1:0, (43.1:1,

I have a simple vector, called tmp that I want to subset based on another vector called vec. Everything works as expected except for below where the subsetting returns something other than the original data. Any ideas? > vec <- c(1,2,3,4,5,59,60,27,32,21) > tmp [1] 1.0 1.1 2.0 2.1 2.2 3.0 3.1 4.0 5.0 5.1 6.0 7.0 8.0 8.1 9.0 [16] 9.1 9.2 10.0 10.1 11.0 12.0 13.0 14.0

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Hi all, in the first step to separate my wins/netbios/nmbd and my clustered samba servers i've installed the WINS feature on a windows 2k8r2 server, and set the "wins server = ip.adress.of.windows.server" the weird thing is: my samba 3.5.8 do not only register the public CTDB ip addresses specified by "cluster addresses =", but also the static maintenance ip's + the

Hi Can anyone advise me on "kernel oplocks" in a ctdb cluster. I have a ctdb (GPFS is the parallel file system) setup that uses samba (3.5.8) for cifs and IBM CNFS for NFS. Reading the documentation on kernel oplocks it seems to me that I can export the same area via samba and NFS with "kernel oplocks = Yes" . My logic is that IBM CNFS has shared NFS locking

At 22:31 03/03/00 +0100, Troels Ring wrote: >Dear friends. A very humble admirer of the progress of R with a very simple problem. I have the data shown below > >month day year dosis vanco >12 31 1999 1 3.8 >1 3 2000 1 2.4 >1 7 2000 1 3.4 >1 12 2000 2 7.1 >1 14 2000 2 5.3 >1 17 2000 2 5.7 >1 19 2000 3 7.7 >1 21 2000 3 8.3 >1 24 2000 4 8.7 >1 26 2000 4

I'm trying to test Samba 3.5.8 with ctdb on AIX 6.1 and running into some issues. I was able to get the latest ctdb code built with some small changes and then get a working cluster, but without CTDB managing the public IP addresses or Samba startup/shutdown. The included event script for managing interfaces is linux specific. Is it possible to allow ctdb to manage the public cluster

Hi, I migrated from asterisk 1.6 to 11.3. The Server has a Sangoma A104 quadPri card installed. OS is a fresh installed Ubuntu 12.04 64bit libpri, dahdi etc. all latest releases.. Sangoma says... driver is compatible with ANY asterisk version... I tried driver 3.5.8... Setup ended with error. I tried (latest) driver 7.0.1 Setup went through, Asterisk is showing dahdi channels... all fine....

I'm currently testing fail-over with a two-node active-active cluster (with node dig and node dag): Both nodes are up, one is manually killed. CTDB on the node that's still alive should perform a recovery and everything should working again. What's infrequently happening is: After killing the pacemaker-process on dag (and dag consequently being fenced), dig's CTDB tries to

Hi We have a ctdb cluster setup as follows ctdb version -- surprisingly difficult to determine. I think it is 1.0.99 (dragged from a include file somewhere, I forget where exactly ). If anyone can tell me how to determine this proberly then I would be pleased to know. samba version 3.5.8 I was hoping to be able to set the UID to SID mapping manually using the following procedure.

I am seeing these errors every night in the logs. Should I be worried about any of them? The only thing I have noticed is slow log ons. Jonn CentOS 5.6 x86_64 Samba 3.5.8 CTDB 1.0.114 DRBD/GVFS --------------------- samba Begin ------------------------ **Unmatched Entries** auth/token_util.c:525(debug_nt_user_token) NT user token: (NULL) : 1 Time(s)

Hello, When I install xen via yum, using virt-manager to build a machine, I was displayed no options for Shared Physical Device. Here is a pic, just for show http://imgur.com/HiPiY Then, I did yum downgrade xen, got no network options at all. Do I need to restart something or run a script? I want to use peth0. packages (CentOS 5.4): gnome-applet-vm 0.1.2-1.el5 kernel-xen 2.6.18-164.15.1.el5

Some day I may figure out how ggplot2 works. I am trying to plot 5 columns of data on a graph (similar to a simple matplot) =========================================================================== library(ggplot2) bmi <- structure(list(pct = 2:21, P10 = c(14.6, 14.5, 14.2, 13.9, 13.7, 13.7, 13.9, 14.2, 14.5, 14.8, 15.3, 15.9, 16.6, 17.2, 17.8, 18.1, 18.3, 18.4, 18.5, 18.6), P25 =

Hello Samba Users, After going through a lot of hassles, i have ended up coming mentioned below samba configuration. But it is still far from a working stage. wbinfo -t, -u and -g works. But wbinfo -i works on few nodes but doesn't work on few resulting in error "Could not get info for user <username>" Strange part is that i could see these messages

Dear R users: I am having problem with following datasets: 4 true measurement: 2 10 15 20 10 repeated measurements for each true measurement 1.9 9.8 14.5 20.2 2.1 10 15 20.1 .... 2.1 9.9 15.1 20.3 how can I use R to model a mixed