similar to: Running 'rsync' as root misses files

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Hi I am having difficulty getting the right format for a lattice plot I am trying to produce. Here is a pic of the plot as I get it now http://i235.photobucket.com/albums/ee37/scotrivers/lattice_plot01.jpg and here is the code I am using: RN<-read.csv("N:/data.dat",header=T) DATA<-RN[is.element(RN$age,0:3),] #select data on age

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Dear sir, I want to submit R batch jobs (e.g. 5) under the linux cluster by the script file "do_mul". The script file "do_mul" " #!/bin/bash export var for var in $(seq 1 5) do qsub -v var do_test done exit 0 " Through "do_mul", 5 "do_test" script files are submitted to the cluster. The script file "do_test": " #!/bin/bash -l

Hi Chris, Thanks for your response! Wu Wei made this happen! and he is organizing LLVM social in Shanghai, Hang Zhou and Shen Zhen. I hope one day there is LLVM developer meeting in China :) 在 2018年05月29日 14:13, Chris Lattner 写道: > This is really great, thank you for getting this off the ground! > > -Chris > > >> On May 28, 2018, at 9:42 PM, Leslie Zhai <lesliezhai at

Hi all, We have been fighting with telco for a entire week. Today they came here with a LITE3000 to analyze what is going on. When I configure zaptel with no external clock, E1 gets aligned/synchronized with bit rate in 2048000 bps, both me and telco. span=4,0,0,ccs,hdb3,crc4 But when I configure span4 to get clock source from telco they become unsynchronized. TElco bit rate stays in

I am currently looking at putting together an Asterisk PBX system for my home office. One of the things I need is an expandable 2-line corded/cordless phone system. If I wasn't using Asterisk, I'd be getting one of these AT&T systems with 2 extra handsets. http://telephones.att.com/attui/shop/product_detail.cfm?itemID=ad53fe08-495e-41b6-b390-3aaa1c84cc40 So, the question is,

Hi, I had originally posted regarding an error when trying to install package - GenABEL - it has now become clear that R is not able to connect to the net. Below are a couple of things I've tried with the resulting errors I am running R 2.6.2 on Linux e15 X86 How can I fix this? Thank you! 1) download.file("http://www.nytimes.com", destfile<-tempfile()) Error: trying URL

在 2018年05月29日 14:58, mayuyu.io 写道: > Any hint on the date of LLVM Social ShangHai? Wu Wei scheduled July 1th http://hellollvm.org/ > > Zhang > >> 在 2018年5月29日，14:22，Leslie Zhai via llvm-dev <llvm-dev at lists.llvm.org> 写道： >> >> Hi Chris, >> >> Thanks for your response! >> >> Wu Wei made this happen! and he is organizing LLVM social in

Hi everyone, There are a number of issues with the current name of the Clang project: * It is prone to incorrect type setting, typically as CLang, CLANG, or most commonly c̦҉̫̘̺̹̖̗͒͆͋̈̃̇߯l߲҉̷̡̰̖͈̤̺͒҆̾̚͡͝a̺̹͍̔߭͠ͅn͋́͡g̱߫̉ * The C++ compiler ends in the string "g++", which causes problems for compiler wrapper scripts * The name has been used by a kickstarter project

Dear all, I facing pbs using RODBC library. I'm working on a Linux (Ubuntu Gutsy) os, with R version 2.5.1. I've got Postgresql 8.2.5 installed with the odbc-postgresql package. I try to connect in a R session to a postgresql database using: odbcConnect(dsn="thedatabasename",uid="theuser",pwf="thepasswd",case="postgresql") I get a message error,

This is really great, thank you for getting this off the ground! -Chris > On May 28, 2018, at 9:42 PM, Leslie Zhai <lesliezhai at llvm.org.cn> wrote: > > Hi LLVM developers, > > My sincere thanks will goto Wu Wei for his great organization! > > I shared a topic " to introduce Loongson's contribution to LLVM and GCC toolchain. > > Slide:

Having some issues with a TE131 apparently causing kernel panics. This is on CentOS 5.10 with DAHDI 2.9.1 (also tried 2.9.2-rc1, no difference.) There?s also an Tracebacks are very similar to this one: https://pbs.twimg.com/media/BrdrQf3CAAE3RXQ.jpg It?s configured with FXSKS signaling and the other end is an Adtran 850, though I?ve also experienced it crossed-over to an older TE13x doing

Hi list, I have installed dovecot on fedora4 and I migrated courier-imap to dovecot with instructions given on the site. everthing works fine for thunderbird, horde, evolution and mail/macosx.. but i have some pbs with pine because it doesnt read .subscriptions and directories aren't seen as it should be seen like in the .subscription. maybe i should reconfigure the .pinerc correctly,

Hello everyone. I have a timing slips errors and I can't understand what source of the problem is. My installation has 2 digium cards: TE420 and TE220 cards in one server. There are 3 spans (E1) to PSTN and 3 spans to internal PBS stations - normal installation for transit communication. Span configuration is: span=1,1,0,ccs,hdb3 #TE420 - first port. To PSTN. span=2,0,0,ccs,hdb3 #TE420 -