similar to: Compile error on cygwin

I have a list of scientific names in a data set. I would like to split the names into genus, species and subspecies. Not all names include a subspecies. Could someone show me how to do this? My example code is: a <- matrix(c('genusA speciesA', 10, 'genusB speciesAA', 20, 'genusC speciesAAA subspeciesA', 15,

Hi all, Given a data frame as... > head(veg) genus species trophia type geo zone importance 1 Sphagnum subsecundum M A En 100 2 Sphagnum denticulatum M A En 200 3 Molinia caerulea M A En 300 4 Sphagnum flexuosum M A En 400 5 Juncus squarrosus M A En 500 6

I just downloaded version 1.0.0 and several binary libraries (VR, rpart, norm, stataread) - WinNT version. I then converted a file from Stata 6.0 to R format by using the stataread library. The file converts perfectly and I was able to use the VR function lda on the dataframe without difficulty. I then tried to use the same dataframe with RPART. The model statement:

To account for likely differences between families in naturalization rates, we fitted a generalized linear mixed model, using PROC NLMIXED in SAS10, with the naturalization rate per genus (that is, the number of naturalized species in a genus as a proportion of the total number of introduced species in a genus) as the response variable, a variable coding genera as containing at least one native

I don't see what's missing in my statements to add rows to a data frame and someone else will probably see what needs to be added to the statements. The data frame has this structure (without any data): $ PHYLUM : chr $ SUBPHYLUM : chr $ SUPERCLASS : chr $ CLASS : chr $ SUBCLASS : chr $ INFRACLASS : chr $ SUPERORDER : chr $ ORDER : chr $ SUBORDER :

Hello R users I'm using MuMIn but for some reason I'm not getting the adjusted confidence interval and uncoditional SE whe I use model.avg(). I took into consideration the steps provided by Grueber et al (2011) Multimodel inference in ecology and evolution: challenges and solutions in JEB. I created a global model to see if malaria prevalence (binomial distribution) is related to any

Dear List, I am looking to calculate two things from my data frame and was after some advice. For the example below i want to know. 1. How many unique Orders/Families and Genera there are per eco-name 2. How many incidences are there for each Order/Family and Genus there are per eco-region I have 650 econame. I.e for Biak-Numfoor rain forests there are 2 orders, 2 families and two genera.

Dear R users, in the example below the name of the genus will be displayed in the main titles using the variable predictor[i] and paste. I would like to have the genus name in italic. However all my attempts using expression and substitute failed. Does anybody know a solution? Thanks a lot in advance. bernd Acrobeles <-c(65.1,0.0,0.0,0.0,0.0,0.0) Acrobeloides

I am making a barplot using barplot2 from gplots where each bar represents a specific tree species. I have formatted the species names on the x-axis so that the genus name is above the species name and have then rotated the labels 45 degrees to save room. This is my code: >columncolor<-c("grey20", "grey20", "grey20", "grey70",

Dear List, I have a data set stored in the following format: > head(dat, n = 10) id sppcode abundance 1 10307 10000000 1 2 10307 16220602 2 3 10307 20000000 5 4 10307 20110000 2 5 10307 24000000 1 6 10307 40210000 83 7 10307 40210102 45 8 10307 45140000 1 9 10307 45630000 1 10 10307 45630600 41 >

I am making a barplot using barplot2 from gplots and would like to format the names of my categorical variables (tree species) on the x- axis so that the genus name is above the species name (to save room). My code so far is: speciesnames<-c("Dialium guianensis", "Inga alba", "Tachigali versicolor", "Brosimum utile", "Caryocar

As part of coreutils' bootstrap, rsync crashes on cygwin: $ /usr/bin/rsync \ --delete \ --exclude '*.s1' \ -Lrtvz 'translationproject.org::tp/latest/coreutils/' \ 'po/.reference' rsync: failed to connect to translationproject.org (*inet_ntop failed*): Connection refused (111) Segmentation fault (core dumped) $ cat rsync.exe.stackdump

Hello I'm using the package ade4 to obtain classification from a .txt file. I use the following commands: cronquist <- read.table("cronquist.txt", h = T, row.names = 8) cronquist <- as.taxo(cronquist[7:1]) cro.phy <- taxo2phylog(cronquist) in which cronquist.txt is a file with a classification of 218 genus of tree species from french Guiana. We I try to use the

I'm trying to get R, Sweave, ESS and XEmacs or emacs all installed and working together on my Windows XP Pro system. I've got R 2.6.0 working just fine, installed from the R Windows installer. I also have CYGWIN_NT-5.1 with XEmacs 21.4 working okay. Can anyone point me to any documentation on how to bring these together so that R code typed in Xemacs can be run in R? I found the ESS

I have some images of bugs (insects) with many bugs in each image. I want to count the number of bugs and to have an estimate of the area of each one. I've tried searching for an R package to do so with no success. Is this a task that I should pursue doing in R or should I restrict myself to specific image analysis software (e.g. ImageJ)?. The reason I consider R would be a good choice is

If more than one speaker receives the *same* signal, it doesn't matter the number of speakers. It only gets tricky when the speakers are playing slightly different signals (e.g. from a stereo song). Jean-Marc Quoting Greger Burman <greger at mobile-robotics.com>: > One thing I can think of is if you are using two or more speakers. If the > speakers are not at the exact same

I am copying from a rsync --daemon (have tried from both W2K/cygwin & Linux daemons) to a W2K machine. Some files get copied every time even though they haven't been touched since the last copy. I have experimented and deturmined that the file size seems to be important. If the file is between 926 & 933 bytes long it will always be copied!! Other sizes and possibly other aspects of

I am trying to rsync a machine running CYGWIN_NT-5.2 server 1.5.24(0.156/4/2) to another which runs FreeBSD 6.2-STABLE; both with rsync 2.6.9. I'm trying to "pull" the files from the Cygwin machine with: /usr/local/bin/rsync -avz --delete --delete-excluded -e "ssh" [user]@[host]:"/cygdrive/e/Shared" /home/[host] However, rsync stalls. This seems to be

$ ls -l a.wav -rw-r--r-- 1 rootboy None 30587804 Jan 7 23:00 a.wav $ flac -v flac 1.2.1 $ type flac flac is hashed (/usr/bin/flac) $ uname -a CYGWIN_NT-5.1 DFBJ7M51 1.5.24(0.156/4/2) 2007-01-31 10:57 i686 Cygwin $ flac -f a.wav a.wav: wrote 16323314 bytes, ratio=0.534 $ flac -l8 -f a.wav a.wav: wrote 16323314 bytes, ratio=0.534 $ flac -l5 -f a.wav a.wav: wrote 16398095 bytes, ratio=0.536 $

Hi all, I would like to set up an iterative read & write sequence to avoid reading and writing each file one at a time. Hundreds of data sets to re-calculate.? The code I have works well individually, but would like to set up an iterative read, calculate and write changing the input and output file names each iteration. I? think I have read that there is an R? feature using