similar to: Vegan: Diversity Plot, label points

Dear List, I can'f figure how to add point labels in the next plot (example from ?taxondive help page, from vegan package): library(vegan) data(dune) data(dune.taxon) taxdis <- taxa2dist(dune.taxon, varstep=TRUE) mod <- taxondive(dune, taxdis) plot(mod) The points in this plot are diversity values of single sites, and I'd like to add a label to each one. The plot command don't

Hi, I've installed Dune 2000 and the 1.06 patch in Wine, and it runs very well, except that it doesn't accept keyboard input. It wasn't any better without the patch. The entry at the appdb doesn't mention anything about it. Does anybody know how to fix it? I've already tried changing all the settings on the "graphics" tab in "winecfg". Half-Life, for

hi i've been trying to get an old game (Dune 2) which i used to play through DOS to work on Linux systems, i've not used this before and am in need of an 'idiot's guide to Linux' i've gotten as far as having unpacked the file and installed it on terminal, it now to the point of running the Setup.exe however when i try to run the setup, i get the following command line

Hello, I've got a small dataset on box turtle shell measurements that I would like to perform a detrended correspondence analysis on. I thought that it would be interesting to examine the morphometrics for each species in the area of overlap and in areas where neither species occurs.  I've taken a look at the dune and dune.env datasets in vegan. Using the str() command gives me  >

Dear List, I will appreciate any advice regarding how to convert the following numbers [I got in return by taxondive()] in numeric integers without the e.g. 6.4836e+01 abbreviations. Thank you very much in advance, Gian > taxa_dive Species Delta Delta* Lambda+ Delta+ S Delta+ Nat1 5.0000e+00 6.4836e+01 9.5412e+01 6.7753e+02 8.7398e+01 436.99 Nat2

Dear R community, I am running R 2.0.1 on a Windoze XP OS. I recently upgraded from R 1.9x to 2.0.1 and I am currently upgrading a my personal function packages. My other packages compiled without a hitch but I am having a difficult time with my largest package. Can someone please help me with the following error message "Error in parse(file, n, text, prompt) : syntax error on line

R users, I recently upgraded (?) to Windows XP from 2000. I am trying to build an R package. I have done this many times on my old system and I am not sure why it is not working in XP. To build the package I call a bat file that specifies all the necessary paths -- but the "build" file (which appears to be a perl script) is looking for a "src" subdirectory in the src

I would like to revisit a problem that was discussed previously (see quoted discussion below). I am trying to do the same thing, using a string to indicate a column with the same name. I am making "foo" a string taken from a list of names. It matches the row where "item" = 5, and picks the corresponding "taxon" > foo <- list$taxon[match(5,list$item)] Let's

Dear R experts I am running a negative-binomial GLM (glm.nb) to test the null hypotheses that species 1 and 2 are equally abundant between site 1 and site2, and between each other. So, I have a 2x2 factorial design with factors Site (1,2) and Taxon (1,2). Since the Site:Taxon interaction is significant, I need to do the equivalent to a "post-hoc test" for ANOVA, however, the same tests

I don't see what's missing in my statements to add rows to a data frame and someone else will probably see what needs to be added to the statements. The data frame has this structure (without any data): $ PHYLUM : chr $ SUBPHYLUM : chr $ SUPERCLASS : chr $ CLASS : chr $ SUBCLASS : chr $ INFRACLASS : chr $ SUPERORDER : chr $ ORDER : chr $ SUBORDER :

I've been comparing variables among objects (taxa) related by known trees, using phylogentically independent contrasts in the ape package, and want to move on to more complex models e.g. by using gls with appropriate correlation terms. My trees contain lots of (hard) polytomies and information about ancestors, which I've been including- creating fully dichotomous trees by using zero branch

Hi all, This is the output of status2.xsl: MountPoint,Connections,Stream Name,Current Listeners,Description,Currently Playing,Stream URL Global,Client:60461 Source: ,,7,, /foxcub,,,7,, - Brian Eno - Dune Prophecy theme, It doesn't look like any csv output I've ever seen. Some of the output seems to be string literal and some of it is the actual server information, and at some parts

Dear R fans, I would like to create a scatterplot showing the relationship between 4 continuous variables. I thought of using the package "scatterplot 3d" to have a 3-dimensional plot and then using the size of the symbols to represent the 4th variable. Does anybody know how to do this? I already tried to create this graph using the colour of the symbols, but I was unable to generate

Hi Listers, This has a simple answer but it has been eluding me nonetheless. I have been building a PCA plot from scratch with the ability to plot predefined groups in different colors. This has worked fine but when I try to get a polygon drawn around each of the groups it is not recognising my colour file correctly and is only printing the first colour in the file....code is below

Hi, I'm trying to use adonis on a subset of data from a dataframe. The actual data is in columns 5:118, and the first four columns are various factors. There are 3 levels of the factor Habitat, and I want to examine differences among only two of them. So I started with: > CoastNear = subset(gel_data, Habitat != "I") The resulting data.frame has three levels for Habitat, but

Hi This question is far less simple than the title suggests, please read carefully, thanks. I have 2 sets of data, both read into R >data1<-read.table ("1.txt", header=T, sep="\t") >data2<-read.table ("2.txt", header=T, sep="\t") >data1 Taxon stage1 stage2 stage3 stage4 T1 0 0 1 1 T2 0

Hello R-user community, I am applying the function metaMDS. However, I would like to know if there is any option to export the data I got from the axis as a data frame. I have tried as.data.frame.list but is not working. Any suggestion? Thank you in advance for your help, Lineth [[alternative HTML version deleted]]

Hello: I need to take a species-sample matrix and transpose it to the format used by PC-ORD for analysis. Unfortunately, the number of species is very large (>5000), and so this operation cannot be performed simply in an application like Excel, which has a 255 column limit. So, I wrote relatively simple code in R that I hoped would do this (appended below). But there are glitches. The

Hello all, I have a *.csv file that looks like this (actual file is orders of magnitude larger): Site taxa no.ind forest LMA 1 forest LCY 1 forest SCO 1 meadow LMA 2 meadow LCY 1 meadow PNT

Hi! Where does samba store printer's ACL and shared driver config? Stefano