similar to: Setting hostname in the .Renvironment

Our lab has a lot of different unix boxes, with different hardware, and I'm assuming (perhaps wrongly) that by setting a per-user package installation directory, the packages will only work on one type of hardware. Our systems are all set up to share the same home directory (and, thus, the same .Renviron file) -- so, is there a way to set, in the .Renviron file, per-computer or

Hi, I have Debian Testing running on a Lenovo Thinkpad X1 Carbon (2015, 3rd gen.). I would like to have a package library independent of the installed R version. Under Ubuntu, I used to have the following line in ~/.Renviron: R_LIBS=/usr/local/R/library:/usr/lib/R/site-library This worked fine and /usr/local/R/library showed up in .libPaths(). However, under Debian (with the same ~/.Renviron),

AFAIU, 'R CMD check --as-cran' tries to hide any site and user package libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary to R_LIBS_SITE, it fails for R_LIBS_USER and the user's personal library is still available for test scripts. Should I revise my assumptions, or is that intentional? The short version. Shouldn't: $ R_LIBS_USER='' Rscript --vanilla -e

Hi, I am interested in customizing the installation of R. I have gone through the ?R Installation and Administration? manual. But some of the stuff is not clear to me and I would like to get clarifications on the following points (for a Windows installation with R_HOME=C:\\R\\R-2.9.1 ) : 1. I understand that I need to create a file, .Renviron with the following path : R_HOME\\etc\\.Renviron where

On Wed, Mar 18, 2020 at 8:04 PM Dirk Eddelbuettel <edd at debian.org> wrote: > > > On 18 March 2020 at 19:19, Henrik Bengtsson wrote: > | AFAIU, 'R CMD check --as-cran' tries to hide any site and user package > | libraries by setting R_LIBS_SITE and R_LIBS_USER. However, contrary > > What makes you think that? AFAIK --as-cran just sets a bunch of the (nearly

I have not intentionally set R_LIBS_USER. I looked for an Renviron.site file but did not see it in R/etc or my home directory. The strange part is that if I print Sud.getenv I see a value for R_LIBS_USER. However, this directory is not showing under libPaths. I though .libPaths should contain R_LIBS_USER. I also noticed that R related variables are not in the system or user variables because I

Martin, I am aware of --vanilla; I use it myself for some testing. In this case R_LIBS_USER was set externally (part of my login) and does not involve any of the R scripts. That means it is inherited by any subprocess. For example: tmt1495% R --vanilla --no-environ R version 3.3.1 (2016-06-21) -- "Bug in Your Hair" Copyright (C) 2016 The R Foundation for Statistical Computing

Dear Johannes, Dear Dirk, Thanks a lot for helping. Here is the missing information. Here is how I installed R. This is basically how Martin Maechler showed me to install R under Ubuntu (in several versions so that they are also recognized by ESS). My goal is to adjust this to make it work for Debian: 1) sudo emacs /etc/apt/sources.list # then add: deb

dear dirk, i am following up on our thread on r-help-mailinglist. you advised me to bring it over here. when installing packages from within R, they usually go to a directory defined in R_LIBS_USER, which i have it set in .Renviron. when installing packages via sudo apt install r-cran-.., they go to /usr/lib/R/site-library. is there a possibility to have packages installed to the R_LIBS-USER

Hi An upgrade to R 3.4.1 on Ubuntu removed the default setting of R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks. Best regards Kirill

Hi Here's a warning for you. If you start R today and it can't find any packages in your home directory that it did find yesterday, don't faint. You'll see something like this: > library(data.table) Error in library(data.table) : there is no package called 'data.table' and your user home folder R packages will no longer appear in path: > .libPaths() [1]

This is probably a very noobish question, but if I want to create a function that allows an undetermined number of, say, numeric vectors to be fed to it, I would use: myfunction = function(...) { # Do something } Right? If so, how do I a) count the number of vectors "fed" to the function, and b) how do I treat those vectors as variables, e.g. for the call:

R-helpers: I'd like to be able to store all the file information from an ftp site (e.g. file and foldernames) through an R command. Any ideas how to do this? Here's an example site to use: ftp://e4ftl01.cr.usgs.gov/MOTA/MCD15A3.005 --j -- Jonathan A. Greenberg, PhD Assistant Professor Department of Geography and Geographic Information Science University of Illinois at

R-helpers: It looks like http://finzi.psych.upenn.edu/search.html has stopped spidering the mailing lists -- this used to be my go-to site for searching for R solutions. Are there any good replacements for this? I want to be able to search both functions and mailing lists at the same time. Cheers! --j -- Jonathan A. Greenberg, PhD Assistant Professor Department of Geography University of

I want my local libraries to have priority over the system installed ones, which, as far as I can make out from help(".libPaths"), means they have to come first in that list (it doesn't actually_say_ so, but that seems to be the idea). We have R_LIBS_USER which looks made for specifying where I keep my own libraries. Unfortunately it comes last in .libPaths() [which appears to

Dear all, the recent update to R-3.4.1 kind of screwed the path to the libraries installed on a user basis. The previous version of the file /etc/R/Renviron had the following line activated: R_LIBS_USER=${R_LIBS_USER-'~/R/x86_64-pc-linux-gnu-library/3.4'} This one is commented in the current one which means that the path to the libraries installed previously is not found. I never

On 02.07.2017 22:01, Dirk Eddelbuettel wrote: > On 2 July 2017 at 21:39, Kirill M?ller wrote: > | Hi > | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of > | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks. > > Pretty much exactly what I told you in person last week :) > > - idea is to prefer /usr/local/lib/R/site-library/

R-helpers: What would be the absolute fastest way to make a large "empty" file (e.g. filled with all zeroes) on disk, given a byte size and a given number number of empty values. I know I can use writeBin, but the "object" in this case may be far too large to store in main memory. I'm asking because I'm going to use this file in conjunction with mmap to do parallel

I asked a couple of months ago in r-sig-fedora about a difference I noticed between Ubuntu and RedHat/Fedora. Now I think I've figured out the cause is a little issue in packaging but I don't know how to get it fixed. On Ubuntu, the setup is like this. It i is controlled in a file called Renviron R packages built/distributed in RPM are installed to /usr/lib/R/library. R packages built

Hello I am a newbie. I had my R upgraded from 2.7.1 to 2.7.2 and in doing so I decided to install all 2.7 versions under c:\program files\R\2.7 from now on (2.7.1 is located under .\2.7.1) Although I don't like the idea (I am running Vista), I have edited etc\Renviron.site to contain: R_USER=c:/Users/eduardo/Documents/R R_LIBS_USER=c:/Users/eduardo/Documents/R/win-library/2.7 As far as