similar to: ssh-keysign bug?

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Hey Valeri - IIRC, midway (and maybe midway2?) use slurm for job scheduling. I don't know how many of your faculty use both your nodes and midway, but maybe consolidating on to a single scheduler would be easier for them? (also, it's been a while ... hi! ? ) Richard -----Original Message----- From: CentOS <centos-bounces at centos.org> On Behalf Of Valeri Galtsev Sent: Friday,

The current Debian distribution (AKA "lenny") install CD verstion "netinst" for i386 fails on an elderly gateway (details below) with the following message: ------------------ ISOLINUX 3.71 Debian-2008-09-06 isolinux: Loading spec packet failed, trying to |<-- screen wrap wing it ... isolinux: Failed to located CD-ROM device; boot failed. See http://syslinux.zytor.com/sbm

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Hi I'm trying to create tables of means, standard deviations and numbers of observations (i) for each laboratory (ii) for each batch number (iii) for each batch at each laboratory for the attached data. I created these functions: summary.aggregate <- function(y, label, ...) { temp.mean <- aggregate(y, FUN=mean, ...) temp.sd <- aggregate(y, FUN=sd, ...) temp.length <-

Some people suggested fsh as a way of speeding up a build system which sshes to different hosts to run jobs in parallel. fsh is very handy but it works by keeping open a *single* connection. It won't work if you want to execute more than one command in parallel on the same host. -- Ed Avis <ed at membled.com>

Please remove me from the mailing list -----Original Message----- From: r-help-bounces at stat.math.ethz.ch To: Shengqiao Li Cc: r-help Sent: 24/03/2004 10:10 AM Subject: Re: [R] Rmpi and PBS On Tue, 2003-12-30 at 08:39, Shengqiao Li wrote: > Hello: > > Anybody knows how to run Rmpi through PBS (Portable Batch System) on a > cluster computer. I'm using a supercomputer which

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Hi I am having difficulty getting the right format for a lattice plot I am trying to produce. Here is a pic of the plot as I get it now http://i235.photobucket.com/albums/ee37/scotrivers/lattice_plot01.jpg and here is the code I am using: RN<-read.csv("N:/data.dat",header=T) DATA<-RN[is.element(RN$age,0:3),] #select data on age

Wayne, Hello, I saw a post of yours out on samba.org and was wondering if you might be able to shed a little light on a problem I'm having with rsync. My rsync source files are all off of nfs mounts and the destination directories are all nfs mounts. The owner and groups all end up as nobody/nobody on the destination, despite being all sorts of owners and groups on the source. Have you

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Dear sir, I want to submit R batch jobs (e.g. 5) under the linux cluster by the script file "do_mul". The script file "do_mul" " #!/bin/bash export var for var in $(seq 1 5) do qsub -v var do_test done exit 0 " Through "do_mul", 5 "do_test" script files are submitted to the cluster. The script file "do_test": " #!/bin/bash -l

OpenSSH Security Advisory: portable-keysign-rand-helper.adv This document may be found at: http://www.openssh.com/txt/portable-keysign-rand-helper.adv 1. Vulnerability Portable OpenSSH's ssh-keysign utility may allow unauthorised local access to host keys on platforms if ssh-rand-helper is used. 2. Affected configurations Portable OpenSSH prior to version

http://bugzilla.mindrot.org/show_bug.cgi?id=526 Summary: potential ssh-keysign segfault if pktype == KEY_UNSPEC Product: Portable OpenSSH Version: 3.6p1 Platform: All OS/Version: Linux Status: NEW Severity: normal Priority: P2 Component: Miscellaneous AssignedTo: openssh-unix-dev at mindrot.org

OpenSSH Security Advisory: portable-keysign-rand-helper.adv This document may be found at: http://www.openssh.com/txt/portable-keysign-rand-helper.adv 1. Vulnerability Portable OpenSSH's ssh-keysign utility may allow unauthorised local access to host keys on platforms if ssh-rand-helper is used. 2. Affected configurations Portable OpenSSH prior to version

qemu-kvm-ev-2.3.0-31.el7.16.1 has been tagged for testing and should reach testing repositories soon. Please help testing and providing feedback, thanks. Changelog since previous release: * Fri Jul 08 2016 Sandro Bonazzola <sbonazzo at redhat.com> - ev-2.3.0-31.el7_2.16.1 - Removing RH branding from package name * Thu Jun 16 2016 Miroslav Rezanina <mrezanin at redhat.com> -

Hi, We are using kernel 2.4.24, tcng version 10b. I''m trying to do some policing in the ingress queue of the internet device. Until now we had configured some filters dividing traffic into queues, and on these queues the Double Leaky bucket meter was applied. The idea is to have a minimum of bandwidth assigned per class (the cir values) and a maximum (pir values), just as with the