similar to: proportional area venn diagrams?

Hi, I am a beginner with "R" and found a package "venn" to create a venn diagram. I tried this “venn” function to generate venn diagram, but i need *Percentage values* instead of counts(frequency) in the oval(circles) of Venn diagram. Output : http://r.789695.n4.nabble.com/file/n3664380/output.docx output.docx I have written have the code as below : # venn diagram for more

Hi R users, I am wondering if it there is any R's function helping integrate venn diagram and pie chart to compare two related datasets. I know the package limma(bioconductor) has something built-in for making venn diagram, but I guess it would be very painful to use line and text to specify the proportions in the fashion of pie chart . Thanks in advance, Kevin Chang -- View this

Hello, I am a total beginner with ?R? and found a package ?venn? to create a venn diagram. The problem is, I cannot create the vectors required for the diagram. The manual say: "R> venn(accession, libname, main = "All samples") where accession was a vector containing the codes identifying the RNA sequences, and libname was a vector containing the codes identifying the

Hi there ! I've got 7 Samples that may contain 29 differents kinds of material.... every line below corresponds to a differente kind of material, example: Sample 1, 2,3,5 and 6 has material 1 .... So I want to know how can I do a Venn Diagram with the data below .... ps ( it was generated by a csv, where every line is sep with (";")) Can someone helps me ? thanks csv file :

I'm trying to plot Venn diagrams with more than 3 sets (5 actually) in order to describe graphically the genetic variation between populations. I tried the limma library but realised it can only plot 3 sets. Is there any solution? Of course I could plot the chart manually but it'll take too long (have other datasets)..... One of my dataset is given below. THanks for any advice. j

Hello there, Does anyone know how to plot venn diagrams in R? Ive searched the mail archive lists but to no avail. Regards, Wayne Jones KSS Ltd Seventh Floor St James's Buildings 79 Oxford Street Manchester M1 6SS England Company Registration Number 2800886 Tel: +44 (0) 161 228 0040 Fax: +44 (0) 161 236 6305 mailto:kssg@kssg.com http://www.kssg.com The information in this

Hi, I am using venn diagram function in AMDA to plot the venn diagram. But it seems in this function, it can only plot 3 or less vectors. Is there a way to plot the venn diagram with more than 3 vectors? Please help. Thanks. Z --------------------------------- [[alternative HTML version deleted]]

Hello R-users, I've got a file with individuals as colums and the clusters where they occur in as rows. And I wanted a table which tells me how many times each individual occurs with another. I don't really know how such a table is called...it is not a frequency table....My eventual goal is to make Venn-diagrams from the occurence of my individuals. So I've this: cluster ind1 ind2

I need to generate venn diagrams for some of my data. I am using the venn library. Is there a function that generates the ids and attributes that I can pass on to venn Library(venn) ids <- c(1,1,1,2,2,2,3,3,3,4,4,5,5,5,6,6,7,8,9,10) attributes <-

Dear list, When I use VennDiagram package, I got a error as follow: venn.plot <- draw.pairwise.venn( area1 = 3186, area2 = 325, cross.area = 5880); Error in draw.pairwise.venn(area1 = 3186, area2 = 325, cross.area = 588) : Impossible: cross section area too large. Does anyone have suggestion? Thank you.

Hi all, I am trying to plot a venn diagram using vennDiagram in limma package, but I have no idea how to have it colorful such as the color one created by the following website: http://www.pangloss.com/seidel/Protocols/venn.cgi. Any one has any advice? Thanks, D.

I was wondering if anyone could help me figure out how to make a Venn diagram in R where the circles are scaled to the size of each dataset. I have looked at the information for venn (in gplots) and vennDiagram (in limma) and I cannot seem to figure out what parameter to change. I have looked this up online and do not seem to be seeing anyone else who has posted this question or the answer to it

Hello All, I have a data.frame with this structure: m <- matrix(sample(c(rep('yes', 10, replace = TRUE), rep('no', 10, replace = TRUE), NA), 500, replace = TRUE), nrow = 100, ncol = 5) colnames(m) <- colnames(m, do.NULL = FALSE, prefix = "col") m <- as.data.frame(m) I need to generate a Venn diagram from this data.frame, displaying the various intersections of

Hello, I am plotting data as a venn diagram but would like to be able to control how it is plotted like a lattice object. Right now, it plots right away. I would like to name it and then plot at will. I thought to convert the whole thing to a PostScript file then get it back into R via grImport, but surely (please!) there must be a less roundabout way to do this. Any help is appreciated. Here

Hi list, This is probably too much to ask, but I'm wondering if there is a ready-to-use function somewhere that allows me to color one area of a venn diagram (e.g. the intersection of two sets)? Thanks! ...Tao

Hello, In limmaGUI, after running a linear model for a single gene & time point (mutant vs control), the venn-diagram for differentially expressed genes with a p-value cut-off gives a different number than the top-table with the same cut-off (2600 vs. 791). I have seen the same thing happen before for multiple time points (when the venn-diagram is more relevant) Any ideas what is going on?

Dear all, I have a set of five datasets with string, for which I need to draw the venn diagram. there are tools available to draw venn diagram online, but limited to three sets. I can also generate venn for three from limma package, but do not know how to proceed with five subsets. Help me in drawing the same any script . Thank you Khush [[alternative HTML version deleted]]

Hi Mark, Uhm... sometimes this is not always possible. For example I have a package QCA which produces truth tables (all combinations of presence / absence of causal conditions), and it uses the venn package to draw a Venn diagram. It is debatable if one should assimilate the "venn" package into the QCA package (other people might want Venn diagrams but not necessarily the other QCA

Hi there, Is there a way to control the circle diameter in venn.diagram function of VennDiagram package? Thanks Mike [[alternative HTML version deleted]]

Thanks all, I don't know either (for the moment). It's all in the design phase still. Generally, I would also like to keep specific functions in specific packages, if at all possible. On Fri, Apr 8, 2016 at 3:03 PM, Mark van der Loo <mark.vanderloo at gmail.com> wrote: > Well, I'm not saying that Dmitri _should_ do it. I merely mention it as an > option that I think is