similar to: Superposing mean line to xyplot

Dear R-helpers, the problem I'm facing today is to convince lattice to paint some areas in gray. The areas I would like to have in gray, are confidence bands I've googled around in the mailing list archives and eventually find some clues. This link is my starting point http://tolstoy.newcastle.edu.au/R/e2/help/07/04/15595.html I'm reproducing here the code for your convenience est

Hi everyone, I am trying to find a way to filter a table; If I am given for example the following table: > head(intra) chr miRNA start end strand ACC hsa_ID region region_start region_end gene_id transcrip_id 1 chr1 miRNA 1102484 1102578 + ACC="MI0000342"; ID="hsa-mir-200b"; exon 1102484 1102578 NR_029639 NR_029639 2 chr1

Dear R users, I try to use xyplot() to display two different response variables from the same dataframe per panel, but don't succeed: xyplot(ptot.seaslog ~ vmcwit | seas, data=reeks, as.table=TRUE, panel = function(x,y){ panel.xyplot(x, y, ylim=c(0,1)) panel.superpose(x=reeks$vmcwit, y=reeks$ptotbin, panel.groups = "panel.xyplot",

Hi, I have a question about heatmap. I have a data with row as microRNA and two columns are two cell expression values for these microRNA. So, like: cell1 cell2 miRNA1 1.5 3.4 miRNA2 1.3 2.4 ................... miRNA50 5 2.1 miRNA51 7.3 0.5 I want to see some miRNA are high in cell1 and low in cell2 but others are low in cell1 and high in cell2. I

Hi, I'd like to plot 4 groups of data using xyplot and panel.superpose so that the points are overlayed on a single plot. For each group of data I'd also like a loess smoothed function (using panel.loess). I have tried the following: xyplot(series ~ time | gr, data=etable, panel = function(x,y, ...) { panel.superpose(x,y, ...) panel.loess(x,y,span=.15)

Dear R Users, I have an xyplot() where different plotting symbols are used for subgroups (originally used within S-Plus, but hopefully it?s also applicable to R users). How can I fit separate regression lines for every subgroup? So far, I can only plot the overall fitted line. The code looks like this: trellis.device() sps<-trellis.par.get("superpose.symbol") sps$pch<-1:7

Dear all, Lattice provides automatic coloring for subgroups on each panel by the simple use of a groups statement. For an application I want to change these colors to a predifined set. This works well using a panel function in stead of the default as long as there are only points in the graphs. When I set type="b" things get messed up. Any idea why? I include sample code for

Full_Name: Volker Franz Version: 1.5.1 OS: Debian-Linux Submission from: (NULL) (134.176.77.64) Hi, working with the panel.superpose function, I found out that this function does not pass the subscripts and groups arguments to panel.groups functions. In my view, this seems an unnecessary restriction, because the subscripts-mechanism which allows to access the original data should also work if

All, I have data across 5 time points that I am graphing via xyplot, along with error bars. For one of the variables I have missing data for two of the time points. The code below is okay but I can't seem to get the lines to connect across the missing time points. Does anyone now how to rectify this? Cheers, David Afshartous library(lattice) ## the data junk = data.frame( Visit =

Dear Rxperts, How do I hide the top and right axes in multiple panel plots? A couple of examples are provided below.. Would highly appreciate appreciate your assistance.. #Example 1 library(latticeExtra) xyplot((1:200)/20 ~ (1:200)/20, type = c("p", "g"), scales = list(x = list(log = 2,alternating=0), y = list(log = 10,alternating=0)), xscale.components =

R friends, I'm running R 2.7.2 on Windows XP SP2. I have some data that's amenable to smoothing, and some that's not. I'm trying to plot smoothed lines for the former along with just points for the latter in a single panel. The problem comes when trying to break out the points by group. My sample code follows. data1 <-

Hi, I'm creating some lattice plots that have a key and I'd like to put a label on the key. The problem is that the text label for the key prevents the values of the group variables from being shown (see example below). I don't think that this is a feature, but I might be abusing the title arg for key. I'm using R Version 2.3.0 (2006-04-24) on Windows XP and lattice V0.13-8

All, I can't seem to get auto.key to work properly in an xyplot that is employing panel.text. Specifically, I often change the default grouping colors then use auto.key accordingly, but for some reason the same functionality isn't working for this different type of plot. Any help much appreciated. Cheers, David library("lattice") dat = data.frame( Y = c(rnorm(18,1),

Hi, I am trying to plot different variables from a data.frame using lattice's xyplot using code like that below. How do I specify a symbol and color for the variable 'prob' and different one's for 'll.prob'? Thanks, Matt xyplot( prob + ll.prob ~ time.eff |stat.id + time.out ,data = OUT, allow.multiple = TRUE, layout = c(6,3), as.table = TRUE ,

Hi folks, I have a vaiable Y and an associated factor Z at several (13) levels. boxplot(Y~Z) produces a nice array of boxplots, one for each level of Z, and each duly labaelled with its level of Z. I would like to superpose on each boxplot the actual data points which it represents, i.e. do something conceptually (though not in real R) expressed as points(Y~Z) or points(Z,Y) It can

Dear List, I have been using R to create an xyplot using the panel function within lattice libraries. This plot is based on the data supplied in R named 'Oats'. The graph represents oat yield by nitro level with an overlay of each variety of oats for each nitro level. I have three questions regarding this graph: 1) I cannot seem to specify the type of symbol used by the plot, even though

Hi All, I have a panel xyplot with 2 lines in each panel. I'd like to label one line only but don't know how to do this. The code below labels both lines. Any ideas how I could change it to show the y-values of only one of the lines? Many thanks! xyplot(apples + bananas ~ year | category, data=fruit, as.table=TRUE, par.strip.text=list(cex=1.2,font="bold"), par.settings =

Hi I have a problem with passing line and symbol parameters to user defined panel functions I had a look at the archives and created a panel function on what was shown and on panel.loess. I could not to get panel.locfit to work for what I intend it for. There is another layer to work with before success as lp() is called from locfit. xx <- structure(list(Farm = c("A",

Win2k, R1.7.1: I am currently working with some growth curve data from a biotoxicology experiment. Each of 12 subjects had their blood drawn at 0, 2, 4, 6, 8, and 10 weeks. For the purposes of the project, it would be helpful if I were able to do the following: a. Produce 12 panels, each displaying the *same* data, with the "strip" at the top of a particular panel showing

Hi, I want to customise the segments on an xyplot. Below is a simple example of what I'm trying to do... #Example dataset x <- c(-0.25, 0.25, 0.8) y <- c(-0.5, 0, 0.75) gp <- c("A", "I", "C") my.data <- cbind.data.frame(x,y,gp) #setting up the parameters to customise the lines with. ltype <- c(1,2,3) env.col <-