similar to: ggplot2 to create a "square" plot

Dear List I am trying to draw a heatmap using ggplot2. In this heatmap I have faceted my data by 'infection' of which I have four. These four infections break down into two types and I would like to reorder the 'infection' column of my data to reflect this. Toy example below: library(ggplot2) # test data for ggplot reordering genes <- (rep (c(rep('a',4),

I'm having problems with this example, it is posted with reproduceable code below, both with the normal 0-6 scale and the desired 3-6 scale (with bars removed). How can I get the graph to have the desired 3-6 scale without removing the bars. Thanks! #Data

I took some data from an online poll about which R GUI people used most and I am messing around with it to learn how to use qplot. Specifically I am making a horizontal bar graph and I have two questions. 1. The categories are ordered in rather strange way at least to me. It is not alphabetical or ascending/descending order of votes cast so i had to manually state the order I wanted which is

Dear list,   I made boxplots using ggplot and want to control for x- and yaxis. Using "plot" I can do it by setting cex.axis equally to any size but can't figure out how to do it with ggplot.     ggplot(dat, aes(x = factor(time), y = volume)) + opts(axis.title.x=theme_text(size=8),axis.title.y=theme_text(size=8)) + geom_boxplot() + geom_jitter(aes(colour = id))+labs(x =

Hello everyone. I am using ggplot and I need some help to merge these two plots into one. plot_CR<-function(x,y,agentid,CRagent){   library(ggplot2)     agent<-CRagent[[agentid]] # To make following expression shorter   ggplot((data.frame(x=CRX,y=CRY,sr=agent$sr)))+   geom_point(aes(x,y,colour=cut(sr,c(0,-10,-20,-30,-40,-50,-60,-70,-80))))+   geom_text(aes(x,y,color=cut(sr,

In ggplot2 how do you justify the legend text ? In the example below the opts(legend.text = theme_text(size = 9,hjust=0)) changes the size of the text OK but it remains right justified. > mydata=data.frame(RowID=c("A","B","C"),Name=c("long long long long long name","short name ","medium medium name"),Speed=c(100,140,120)) >

Dear R users, First just want to say thank you to all for developing such a wonderful software and packages. I need to produce a wind rose plot. Tried with packages circular and plotrix and couldn't quite get what I want. Moved to package ggplot2 and it's going great. However stuck in how to move axis labels. I am using the wind rose from the help to learn how to do what I need (code

Hi all, I want to arrange two ggplot2 plots on the same page with their x-axes lined up - even though one is a boxplot and the other is a line plot. Is there a simple way to do this? I know I could do this using facetting if they were both the same type of plot (for example, if they were both boxplots), but I haven't been able to figure it out for two different types of plots. Below is my

Dear R-users, I am preparing graphs for an upcoming article using the different functions of the ggplot2 package and I've been having problems with the legend background. It doesn't seem to scale when the text size is increased. Here's the mandatory reproducible example: library(ggplot2) repFrame <- data.frame(A= 1:10, B= rnorm(1:10), groupNum = rep(c("First group",

Please consider the following dataset: I want to reorder the levels by year but get the following error: Error in tapply(v, x, FUN, ...) : arguments must have same length ? I suspect that I need to add the levels before I melt the dataset ?but either way I have only use 'reorder' once before and can't figure ?out how it works..Thanks for any advice. ? winter <- (list(week = c(26L,

Hi All, Here is the code that I'll be referring to: p <- ggplot(wastran.data, aes(PER_KEY, EVENTS)) (p <- p + facet_grid( pool.short ~ .) + stat_summary(aes(y=EVENTS), fun.y = sum, geom="line") + opts(axis.text.x = theme_text(angle = 90, hjust=1), title="Events (15min.) vs. Time: Facet pool", strip.text.y = theme_text()) ) Now, depending on preceding

Hi all, Thanks for the really great help I've received on this board in the past. I have a very particular graph that I'm trying to plot, and I'm not really sure how to do it. I think I should be able to use ggplot for this, but I'm not really sure how. I have a data.frame which contains fifty sub frames containing one hundred data points each. I can do a histogram of each of

Manuel: I changed your variable names from x to 'long' and y to 'lat' on the riqueza_out.csv file. The code below should do what you want. Also, since the legend title is kind of long, I broke it down into three lines so you can see more plot area. I am cc'ing the other groups so more people use it if needed. library(rgdal) library(ggplot2) library(sp) library(maptools)

Hello all, I've been using the following qplot command: qplot(pixX,pixY, data=som, geom="tile", fill=rgb) + scale_fill_identity() + opts(aspect.ratio = .75) + facet_grid(unitX ~ unitY) Now I would like to convert it into the explicit ggplot grammar, so I can remove the extras: axes, labels, background, borders, facet labels, and extra white-space around the plot. (If anyone has

Given the data structure below and the call to ggplot2, how can I increase the size of the axis scale points, the line weight, and the size of the legend? ddata <-structure(list(year = structure(c(1L, 1L, 1L, 1L, 1L, 1L, 1L, 2L, 2L, 2L, 2L, 2L, 2L, 2L), .Label = c("2003", "2007"), class = "factor"), area = structure(c(7L, 6L, 1L, 2L, 3L, 4L, 5L, 7L, 6L, 1L,

Hi, I wanted to generate a plot which is almost like the plot generated by the following codes. category <- paste("Geographical Category", 1:10) grp1 <- rnorm(10, mean=10, sd=10) grp2 <- rnorm(10, mean=20, sd=10) grp3 <- rnorm(10, mean=15, sd=10) grp4 <- rnorm(10, mean=12, sd=10) mydat <- data.frame(category,grp1,grp2,grp3,grp4) dat.m <- melt(mydat) p <-

Dear R-users, I am trying to make a plot with ggplot-geom_tile(), but cannot remove some unwanted (white) lines through my plot. Below a reproducible example: ##### library(ggplot2) tot=as.data.frame(rep(seq(-50,50,5),each=21)) names(tot)="precip" temp=rep(seq(-5,5,0.5),21) tot$temp=temp disc=array(dim=c(21,21)) for(i in 1:21){ for(y in 1:21){ temp<-

I'm trying to reproduce the 3rd graph on the page of this site: http://learnr.wordpress.com/2009/03/17/ggplot2-barplots/ . However, the data below produces a ggplot with the stacks sorted in alphabetical order from the bottom up. I'd like the stacks to be in the order "Europe", "Asia", "Americas, "Africa", "Oceania". Is there an easy way to

Dear all, today I have writted the following code, to plot the contents of some matrices I have plot_shad_f function(f){ library(ggplot2) dev.new() plotdata<-melt(f) names(plotdata)<-c('x','y','z') v<-ggplot(plotdata, aes(x, y, z = z)) print(v + geom_tile(aes(fill=z))) } I would like to ask your help add a small circle in this plotting. What would be

hi all ,? i have an problem in script R . But when I execute the script R I face this error . can you help me please ???error:----------------------------------------- Error in FUN(X[[i]], ...) :?? Theme element 'text' has NULL property: margin, debugIn addition: Warning messages:1: Removed 361 rows containing non-finite values (stat_smooth).?2: Removed 361 rows containing missing values