similar to: Problem resolved: thanks! RE: column names with rbind loop

Hello R users. This is a fairly basic question: I am concatenating data from sets of files in a directory using a loop. The column names in all files are exactly the same. My understanding is that rbind takes column names from the first file it reads. However, my output is showing that the column names are treated as a first data row, not treated as headers. I compile my file names like this:

Thanks to David and Jorge - both of your helpful suggestions got me to the desired endpoint. In case anyone else has this question: I boxplotted my y variable data, but did the "cut" operation on the x variable in order to conserve the order of the y data. I see another suggestion coming in from another user that basically says this. So, my working line of code was: boxplot(count$RPKM

Thanks for your help, Rui! That works and will save me a lot of trouble. --Kelly -----Original Message----- From: Rui Barradas [mailto:ruipbarradas at sapo.pt] Sent: Tuesday, July 10, 2012 2:24 AM To: Vining, Kelly Cc: r-help at r-project.org Subject: Re: [R] boxplot with "cut" Hello, Maybe this iss what you're looking for. GD is your data.frame. multi.boxplot <-

Dear UseRs, I'm making box plots from a data set that looks like this: Chr Start End GeneDensity ReadCount_Explant ReadCount_Callus ReadCount_Regen 1 1 1 10000 107.82 1.243 1.047 1.496 2 1 10001 20000 202.50 0.835 0.869 0.456 3 1 20001 30000 158.80 1.813 1.529 1.131

Dear R users, I am running the following code below, the gem751be.rpkm is a dataframe with dim of 751 samples by 35164 variables, 73 phenotypic variables in the furst to 73rd column and 35091 genomic variables or genes in the 74th to 35164th columns. What I need to do is to calculate the residuals for each gene using the simple linear regression model of genelist[i] ~ purity2; The following

Thanks Don and Jim, "Get" did the trick! That command is new to me, and is exactly what this problem needed. The syntax that worked is actually slightly simpler than what was suggested. This is what worked: all.comps <- ls(pattern="^res") for(i in all.comps){ obj = get(i); ... Thanks again. --Kelly V. -----Original Message----- From: MacQueen, Don [mailto:macqueen1 at

Hello, I'm seeing three different vignette-related errors with recent versions of R-3.0.0 alpha. First, with the package BitSeq (http://bioconductor.org/packages/2.12/bioc/html/BitSeq.html), I get the following when trying to build the package: Error: processing vignette ?BitSeq.Rnw' failed with diagnostics: Failed to locate the ?weave? output file (by engine ?utils::Sweave?) for

hi Michael, Sorry for taking so long to reply, I just get back on vacation. Your advice is very helpful. Our purpose is no IO interrupted with Window 7 cifs client accessing the shared folder when virtual IP taken over by another node. SMB3.0 or newer protocol do meet that demand, but Window 7 cifs client only supports SMB2.1 protocol and previous versions. So we need implement a

Hi all, I have been struggling with this problem for a few days. I have a data table like this: gene rpkm1 diff1 rpkm2 diff2 gene1 23 50 13 120 gene2 111 220 827 1200 gene3 75 998 71 910 And I want to re-format it so that, for each gene, I have a 2x2 contingency table, such as: gene rpkm diff gene1 23 50 gene1 13 120 gene2 111 220 gene2 827

If a guest sets a state and dirties the state, but later temporarily clears the state, and at this time if this vcpu is scheduled out, then other vcpus may corrupt the state before the vcpu is scheduled in again, thus the state cannot be restored correctly. To solve this issue, this patch save/restore all states unconditionally on vcpu context switch. Signed-off-by: Weidong Han

Thank you very much for reply. Our test team insists on simulating network failure by using ifdown instead of just unpluging the cable. I have to modify the event script 10.interface. When noticing a NIC failure, CTDB just marks the NIC down and do not try to pull it up. It seems to work fine. -----邮件原件----- 发件人: Martin Schwenke [mailto:martin at meltin.net] 发送时间: 2016年9月18日 18:49 收件人: Weidong

For IOAPIC interrupt remapping, it only needs to remap ioapci RTE, should not remap other IOAPIC registers, which are IOAPIC ID, VERSION and Arbitration ID. This patch adds the check for this and only remap ioapci RTE. Signed-off-by: Anthony Xu <anthony.xu@intel.com> Signed-off-by: Weidong Han <weidong.han@intel.com> _______________________________________________ Xen-devel mailing

Fix addr_to_dma_page() issue to return l1e correctly, and also clean up rmrr mapping code, make sure setup rmrr identify mapping just once per domain. This patch fixes the VT-d bug (Fail to boot smp Linux guest with VT-d NIC assigned on IA32e platform). Signed-off-by: Weidong Han <weidong.han@intel.com> _______________________________________________ Xen-devel mailing list

If pass-through field in extended capability register is set, set pass-through translation type for Dom0, that means DMA requests with Untranslated addresses are processed as pass-through in Dom0, needn''t translate DMA requests through a multi-level page-table. Signed-off-by: Anthony Xu <anthony.xu@intel.com> Signed-off-by: Weidong Han <weidong.han@intel.com>

Many thanks to Duncan Lang and Patrick Connolly for their very helpful suggestions. I used ldd to look up R.so and was told that libR.so was not found. After I changed LD_LIBRARY_PATH, it worked! Weidong Weidong Zhang wrote: > Hello All, > > I installed RSPerl following the instructions from > http://www.omegahat.org/RSPerl/ but got an error message when I tried to > run

If eth0 holds virtual IP as its secondary IP and I bring down eth0 by command "ifdown eth0", CTDB will automatically pull eth0 up. Sometime it goes wrong. The virtual IP becomes primary IP, and origin primary IP turns into a secondary IP or just missing. If the origin primary IP is missing, I have to run "ifup eth0" though CTDB has pulled eth0 up. CTDB uses “ip link set eth0

This patch maps RMRR in intel_iommu_add_device() if the device has RMRR; move domain_context_mapping() to be in front of list_move() in reassign_device_ownership(). Currently, hypervisor sets up devices and RMRR for dom0, and dom0 also adds devices for itself via hypercall. This is obviously duplicate. In order to allow old dom0 kernels to work with iommu-capable platforms, maybe it cannot be

Folks, I am having major performance issue with my Erlang application running on openstack KVM hypervisor and after so many test i found something wrong with my KVM guest CPU Topology This is KVM host - http://paste.openstack.org/show/790120/ This is KVM guest - http://paste.openstack.org/show/790121/ If you carefully observe output of both host and guest you can see guest machine threads has

This patch removes a wrong if condition judgement to setup rmrr identify mapping for guests, and passes page count rather than address size to iommu_flush_iotlb_psi(). Signed-off-by: Weidong Han <weidong.han@intel.com> Signed-off-by: Anthony Xu <Anthony.xu@intel.com> _______________________________________________ Xen-devel mailing list Xen-devel@lists.xensource.com

During parsing DMAR table, if find RMRR is incorrect, return error. Signed-off-by: Weidong Han <weidong.han@intel.com> _______________________________________________ Xen-devel mailing list Xen-devel@lists.xensource.com http://lists.xensource.com/xen-devel