similar to: column names with rbind loop

Thanks to both Weidong and David for the help! By implementing both of your suggestions I was able to make this work. I did end up putting header=TRUE for both read operations. --Kelly ________________________________________ From: David Winsemius [dwinsemius at comcast.net] Sent: Tuesday, August 30, 2011 1:16 PM To: Vining, Kelly Cc: Weidong Gu; r-help at r-project.org Subject: Re: [R] column

Thanks to David and Jorge - both of your helpful suggestions got me to the desired endpoint. In case anyone else has this question: I boxplotted my y variable data, but did the "cut" operation on the x variable in order to conserve the order of the y data. I see another suggestion coming in from another user that basically says this. So, my working line of code was: boxplot(count$RPKM

Dear R users, I am running the following code below, the gem751be.rpkm is a dataframe with dim of 751 samples by 35164 variables, 73 phenotypic variables in the furst to 73rd column and 35091 genomic variables or genes in the 74th to 35164th columns. What I need to do is to calculate the residuals for each gene using the simple linear regression model of genelist[i] ~ purity2; The following

Dear UseRs, I'm making box plots from a data set that looks like this: Chr Start End GeneDensity ReadCount_Explant ReadCount_Callus ReadCount_Regen 1 1 1 10000 107.82 1.243 1.047 1.496 2 1 10001 20000 202.50 0.835 0.869 0.456 3 1 20001 30000 158.80 1.813 1.529 1.131

Hello, I'm seeing three different vignette-related errors with recent versions of R-3.0.0 alpha. First, with the package BitSeq (http://bioconductor.org/packages/2.12/bioc/html/BitSeq.html), I get the following when trying to build the package: Error: processing vignette ?BitSeq.Rnw' failed with diagnostics: Failed to locate the ?weave? output file (by engine ?utils::Sweave?) for

Hi all, I have been struggling with this problem for a few days. I have a data table like this: gene rpkm1 diff1 rpkm2 diff2 gene1 23 50 13 120 gene2 111 220 827 1200 gene3 75 998 71 910 And I want to re-format it so that, for each gene, I have a 2x2 contingency table, such as: gene rpkm diff gene1 23 50 gene1 13 120 gene2 111 220 gene2 827

Hi all, In short: I'm running ddply on an admittedly (somehow) large data.frame (not that large). It runs fine until it finishes and gets to the "collating" part where all subsets of my data.frame have been summarized and they are being reassembled into the final summary data.frame (sorry, don't know the correct plyr terminology). During collation, my R workspace RAM usage goes

Thanks for your help, Rui! That works and will save me a lot of trouble. --Kelly -----Original Message----- From: Rui Barradas [mailto:ruipbarradas at sapo.pt] Sent: Tuesday, July 10, 2012 2:24 AM To: Vining, Kelly Cc: r-help at r-project.org Subject: Re: [R] boxplot with "cut" Hello, Maybe this iss what you're looking for. GD is your data.frame. multi.boxplot <-

Hi, R-help, I have a group of data from RNA-seq want to be analyzed by Fisher's exact test in R. I want to compare the significant difference of about 30,0000 individuals in two different samples, and I have no idea how to use R, so could you please give me some suggestions or the scripts for Fisher's exact test? Thank you very much. Best, Guanfeng Wang [[alternative HTML version

Hello List, in the following environment SUSE Linux Enterprise 11SP3 with bind 9.9.4P2 and the Sernet samba packages in version 4.1.7. samba works as AD PDC. Every few days our bind dns server denies updates. It looks like a problem with kerberos and the bind_dlz driver: Jul 2 08:04:21 s4ad named[22579]: samba_dlz: starting transaction on zone baettenhausen.local Jul 2 08:04:21 s4ad

I am trying to use dovecot without ssl in centos 7. It works with imap but I am not able to make it work with pop3. Pop3 only works with ssl=yes. I can use dovecot in centos 4 ok.? I get the same error with thunderbird and outlook. But for some reason it works when I telnet to port 110 and do retr 1. I was able to work pam and shadow passwords. this is the output that does not work with tls

Hello R users, I have a set of data frames for which I am tallying row numbers, as shown below. > nrow(mC_Explant) [1] 14480 > nrow(mC_Callus) [1] 23320 > nrow(mC_RegenPlant) [1] 8108 etc. I want to create a new data frame which has the variable names as column headings, and then a single row with the nrow tallies. My first step was this: dfIntron <- c(nrow(mC_Explant),

hi*& ppl, what I see? smbstat shows this: veda uucp uucp 17012 vdv (193.168.6.84) Sun Dec 19 14:33:43 1999 squid-wate piv guest 19110 nlv (193.168.6.74) Mon Dec 20 08:51:18 1999 squid-nav paul wheel 19110 nlv (193.168.6.74) Mon Dec 20 08:51:42 1999 nlv nlv guest 19110 nlv (193.168.6.74) Mon Dec 20 09:11:31 1999

Dear useRs, I have a slightly complicated data structure and am stuck trying to extract what I need. I'm pasting an example of this data below. In some cases, there are duplicates in the "gene_id" column because there are two different "sample 1" values for a given "sample 2" value. Where these duplicates exist, I need to average the corresponding

What OS/MTA are you using? Can you give me (privately if you want) a re-hash of the LDA issues? I'm using FreeBSD 10.3 / Exim for my set up and LMTP for ALL deliveries, and it works great. On Sat, Nov 5, 2016 at 12:06 PM, Ben Johnson <ben at indietorrent.org> wrote: > On 11/5/2016 1:03 PM, Larry Rosenman wrote: > > could your script be modified to use LMTP? > >

Dear useRs, A colleague has sent me several batches of output I need to process, and I'm struggling with the format to the point that I don't even know how to extract a test set to upload here. My apologies, but I think that my issue is straightforward enough (for some of you, not for me!) that you can help in the absence of a test set. Here is the scenario: # Data sets are lists: >

All, I would like to apply a set of rules to each row of the sample data set below. The rule sets are the guidelines for determining an individual's date for retirement eligibility. The rules are found in this document, http://www.opm.gov/feddata/RetirementPaperFinal_v4.pdf. I am only interested in the top two categories for retirement eligibility, the CSRS and FERS plans. The data set has

Hi Everyone, I am currently running Trixbox 2.6 and I have a problem with Asterisk. /etc/init.d/asterisk status Asterisk dead but subsys locked I deleted all files in /var/run/asterisk folder and asterisk restart... It's ok for a while. But some days after Asterisk again is dead. Can anybody help me? Rgs / budacsik

Dear UseRs, I have a data frame that looks like this: head(test2) attributes start end StemExplant Callus RegenPlant 1 LTR_Unknown 120 535 3.198 1.931 1.927 3 LTR_Unknown 2955 3218 0.541 0.103 0.613 6 LTR_Unknown 6210 6423 6.080 4.650 9.081 9 LTR_Unknown 9658 10124 0.238 0.117 0.347 14 LTR_Unknown 14699 14894 3.545 3.625

I'm a new dovecot user, just began using it last week. I switched from courier because my research showed that Dovecot did indexes, and allows me to store them anywhere I chose. I did this, and it fixed some severe disk IO issues that my server had. (25k horde only webmail install using imap proxy). I'm using quotas, and by default had it set to 'dirsize'. my postfix is already