similar to: User input(unknown name and number of files)

Dear all, I have 100 files which are used as input.and I have to input the name of my files again and again.the name of the files are 1.out, 2.out......100.out. I want to know if there is anything like perl so that i can use something like this- for($f = 1; $f <= 100; $f++) { $file = $f.".out"; I have tried this thing in R but it does not work.Can somebody please help me.

Dear all, I am doing a project on variant calling using R.I am working on pileup file.There are 10 columns in my data frame and I want to count the number of A,C,G and T in each row for column 9.example of column 9 is given below- .a,g,, .t,t,, .,c,c, .,a,,, .,t,t,t .c,,g,^!. .g,ggg.^!, .$,,,,,.,

Dear all, I have one problem and did not find any solution.(I have also attached the problem in text file because sometimes column spacing is not good in mail) I have a file(file.txt) attached with this mail.I am reading it using this code to make a data frame (file)- file=read.table("file.txt",fill=T,colClasses = "character",header=T) file looks like this- Chr Pos

Dear all, I have two data frames- x1 and y1 with same row names and column names(actually the names of the patients). x1 a b c d e a 1.0000000 0.4730679 0.6226994 0.6036036 0.6433333 b 0.4730679 1.0000000 0.6227273 0.6303855 0.5730858 c 0.6226994 0.6227273 1.0000000 0.7290503 0.6900585 d 0.6036036 0.6303855 0.7290503 1.0000000

Dear all, I was working on number of files and at the end I got a data frame with approx. million rows.To prin this data frame in output, I used capture.output(print.data.frame(end,row.names=F), file = "summary", append = FALSE) where end is the name of my data frame and summary is the name of my output file. but when I checked the output there were only 10000 rows and at the last it

Dear all, I have a data frame whose name is m1. I want to write this data frame in text file as output.I am using this code- write.table(m1, file = "kas.txt", append = FALSE,row.names=F,quote=F,sep="\t") When I am opening my kas.txt file,the column names are not coming exactly above the column. What should I do.Please help me. Thanking you, Warm Regards Vikas Bansal Msc

Dear all, I am using grep but I did not understand the problem as I am doing something wrong.Please help me. I am using this code- sf=data.frame(sapply(df[],function(x) grep('\\.&\\,', df[,9]))) the thing is i have a data frame(df) like this- 10 135349467 g G 4 0 0 5 ,,,., 10 135349468 t T 2 0 0 5 ,,c., 10 135349469 g G 7 0 0 5 ,,a., 10 135349470 c C 8 0 0 5 ,,,., 10 135349471

Dear all, The 5th column of my data frame is like this- .$.$.$.$.$,$,$...,,,,,.,,.,,...,,,,.,,....,,,T...,,,,,,,,,,,.,,,,,....,,...,, ,..,,....,,,,,...,,,..,,......,,,,,,,....,,,.,,,,....,,...G.,,,,,,,,...,,,,,,.,, ,t.,,c,,.a.,,,.A,,,,....,,,.....,,,,..........,,,,,..,,,.,,,....,,,,,...,,,$.... .,,,,..,,,...,,,,,..,,,,,,.............$..,,,,,,...,,..,,$,...,,,,,,,....,,,,,,.

Dear all, I have a data frame df and i am using a code shown below. df[, "total"] <- rowSums(df[, 3:6]) MAKING A NEW COLUMN total in df BY ROWSUMS defineSamples<- function() { readline("enter the number of INDIVIDUALS IN POOL: ") } df$ind=definesamples() CALLING THE FUNCTION AND STORING THE INPUT FROM USER IN NEW COLUMN OF df df[, 3:6] <-

Dear R people, I have to deal with the output of a function which comes as a matrix of vectors. You can reproduce the structure as given below: x <- list(c(1,2,4),c(1,3,5),c(0,1,0), c(1,3,6,5),c(3,4,4,4),c(0,1,0,1), c(3,7),c(1,2),c(0,1)) data <- matrix(x,byrow=TRUE,nrow=3) colnames(data) <- c("First", "Length", "Value") rownames(data)

Folks: I consider my reply below rather clumsy: One has to keep track of index numbers other than that which is inserted and must separately change column names. Is there as "essentially better" way to do this, either via base R or via an R package. I leave it to you to define "essentially better." Thanks. Cheers, Bert On Mon, Aug 1, 2011 at 10:17 AM, Bert Gunter

Hi all, I'm building a plot of the values in tmeant (below) against positions 1 to 5, using matplot. tmeant looks like this: case1 case2 pos1 861.8466 818.5909 pos2 961.2841 976.3466 pos3 878.6080 1262.8523 pos4 950.8011 1129.6080 pos5 968.1080 1063.3920 I also have lower (object tl) and upper (object tu) bounds on the confidence intervals as follows: tl: pos1

HI all, This is probably simple, but I haven't been able to locate the answer either in the Import Manual or from searching the listserve. I have tab-delimited data with different numbers of elements in each row. I want to read it into R, such that R fills in "NA" in elements that have no data. How do I accomplish this? Example: DATA on disk: 1 -0.068191 -0.050729

I am trying to read in a pipe delimited file that has rows with varying number of columns, here is my sample data: A|B|C|D A|B|C|D|E|F A|B|C|D|E A|B|C|D|E|F|G|H|I A|B|C|D A|B|C|D|E|F|G|H|I|J You can see line 6 has 10 columns. Yet, I can't explain why R does like so: > test <- read.delim("mypaths4.txt", sep="|", quote=NULL, header=F,

Dear R users: I just got confused some R code used in linear mixed model~ example,two factors,A, B,C,A is fixed ,B,C are random,and B is nested in C,if I wannt to use linear mixed model,are the following code correct for each case? case1:want to know random effect of B, case1<-lme(y~A*B*C,random=~B|C) where "B|C" stand for what?,mean B is nested in C? case2: how to wirte

Hi list, I have been trying to pileup dataframes with different column names using rbind. I am getting the following error message. I was wondering if there is a way to go around this minor problem? Error in match.names(clabs, names(xi)) : names don't match previous names: G Thanks indeed for your information Regards Mahdi -- ----------------------------------- Mahdi Osman (PhD)

Hi, I am looking for a way to read tables that have general structure of characterTag num1 num2 ... i.e. one character column followed by an unknown to the caller (but fixed throughout the file) number of numeric columns. I wanted to improve the speed of read.table by using colClasses, but that seemed to require knowledge of the actual number of columns in the file. For example I tried

timo, here is an bizarre bug for you: i had (foolishly, it turns out) configured dovecot-auth to do ldap authentication binding with a prefect userdb (configs at end of message). everything worked fine, although with huge numbers of pop logins per second we started to see some pileup in the pop3-login processes as they were all waiting for ldap responses on the single ldap connection. the

Hello, I've some problem with the ggplot2. Here's a small example: --8<-- library(ggplot2) molten <- data.frame(date=c('01','01','01','01', '02','02','02','02'), channel=c('red','red','blue','blue',

Hi, Is it possible to convert a string vector to integer or numeric vector? In my situation I receive data in a string vector and have to convert it based on a given type. -- Rajesh.J [[alternative HTML version deleted]]