similar to: R package: pbatR

On Fedora Core Linux 4, I have a cron job that causes R to update all packages and install new ones. Lately, I notice in the log that some packages fail to install. These are ones that assume X is running. For example, the pbatR install requires tcltk to be loaded, and then the install fails because in a cron job, there is no DISPLAY environment. I suppose the same happens if you try to

On Fedora Core Linux 4, I have a cron job that causes R to update all packages and install new ones. Lately, I notice in the log that some packages fail to install. These are ones that assume X is running. For example, the pbatR install requires tcltk to be loaded, and then the install fails because in a cron job, there is no DISPLAY environment. I suppose the same happens if you try to

Hello, I am having really hard time finding a good article about simulating genotypes of cases and controls at a disease locus using R. if you guys can point me or guide me where i can find more information, it will be helpful. thanks, Claire -- View this message in context: http://www.nabble.com/genotypes-simulation-tp17065607p17065607.html Sent from the R help mailing list archive at

Hello folks, I am having a problem installing pbatR package. (My R version is 2.8.1.) As I execute a command > install.packages(lib='/usr/local/apps/R-2.8.1/lib64/R/library', "pbatR") it detects lack of rootSolve package and attempts to install it. But cannot seem to compile it, and the rest is aborted. Any hint as to what I can do? Thank you in advance for your

In trying to install the pbatR package, I was greeted with the error Error: package 'tcltk' does not have a name space Execution halted Directly installing the package tcltk2 returned the following error: Loading required package: tcltk Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system I have seen from previous posts that tcl/tk must be

Does anyone know if the sib TDT has been implemented in R 1. Spielman, R.S., and Ewens, W.J. (1998) A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test. Am J Hum Genet 62, 450-458 -- Farrel Buchinsky, MD Pediatric Otolaryngologist Allegheny General Hospital Pittsburgh, PA

Hi, Having trouble loading tcltk in R 2.2.1 built from source. ./configure, make, make check, and make install run ok. > library(tcltk) Error in firstlib(which.lib.loc, package) : Tcl/Tk support is not available on this system Error in library(tcltk) : .First.lib failed for 'tcltk' even though it is listed in library() output. I have the same problem even if i compile

I have the complete data like id time censor 1 10 0 1 20 0 1 30 0 2 10 0 2 20 1 2 30 0 2 40 0 3 10 0 3 20 0 3 30 1 .... for id 1, i want to select the last row since all censor indicator is 0; for id 2, i want to select the row where censor ==1; for id 3, i also want to select the row where censor==1. So if there is a 1 for censor, then I want to select such a row, otherwise I want to select the

Hi, I believe configure was not finding tk.h, because tk-devel rpm was not available on the given host. Thanks Erik and Peter for the suggestions on checking tk.h and stdout of ./configure. Just one further question for Peter> "Well, the package is there, as a stub to tell you that it doesn't work...." So then how can you confirm from the library() output (or elsewhere) if

We have some new Solaris boxes (both Sparc and amd64), and as they are not yet in production use I borrowed some time on them to run tests over CRAN packages, using the Solaris make and Sun Studio compilers. The results were quite depressing. Sun Studio 12 compilers are also available for Linux, and there the problems are worse (for C++ code). Line endings ============ We checked in R CMD

I want to produce some boxplots and plot the logged values but have the axis scale in the original, not-logged scale. It seeming like I have the first few steps but I'm having trouble with the last. Here's what I'm doing (which I got for the documentation for boxplot and axis). How do I get the ticks to be labeled 2,5, and 9 of the original scale? a<-c(1,2,3,4,5,6,7,8,9,10)

Hi All Please see the Rprofile file which i have modified as follows and after that when I start R then I see that R says to me "TRUE" for all the packages implying that all loaded at once. But when i try to use commands as simple as help("lm"), it doesnt work nor any of the menu "Packages" is not working. Although the regression using lm ( Y ~ X ) is working

Hi, i have a question in R, How and what command you need to do to run a kruskal-wallis test without the built in command 'kruskal.test'? many thanks. _________________________________________________________________ [[alternative HTML version deleted]]