similar to: question about split

I appreciate that this is OT, but I'd be grateful for pointers to examples of where Sweave has been used for web-based applications. In particular, examples of where reports/analyses are produced automatically through submission of data to a web-sever. I am mostly interested in situations where pdf reports have been produced rather than, say, a plot/table etc shown on a web page.

Hi, I wish to compute multivariate test statistics for a within-subjects repeated measures design with anova.mlm. This works great if I only have two factors, but I don't know how to compute interactions with more than two factors. I suspect, I have to create a new "grouping" factor and then test with this factor to get these interactions (as it is hinted in R News 2007/2), but

Let's say I have a within-subject experiment with 2 observables, obs1 and ob2 and 2 independent factors, fac1 and fac2. I can do summary( aov( obs1~fac1*fac2 + Error(Subject/(fac1*fac2)) ) ) summary( aov( obs2~fac1*fac2 + Error(Subject/(fac1*fac2)) ) ) to test the 2 observables separately. > summary( fit<-manova( cbind(obs1,obs2)~fac1*fac2 + Error(Subject/(fac1*fac2)) ) ) gives

hello list, i'd very much appreciate help with setting up the contrast for a 2-factorial crossed design. here is a toy example: library(multcomp) dat<-data.frame(fac1=gl(4,8,labels=LETTERS[1:4]), fac2=rep(c("I","II"),16),y=rnorm(32,1,1)) mod<-lm(y~fac1*fac2,data=dat) ## the contrasts i'm interressted in: c1<-rbind("fac2-effect in

Hi all, I had some trouble in?regrouping factor levels for a variable. After some experiments, I have figured out how I can recode to modify the factor levels. I would now like some help to understand why some methods work and others don't. Here's my code : rm(list=ls()) ###some trials in recoding factor levels char<-letters[1:10] fac<-factor(char) levels(fac) print(fac) ##first

Hello Again... I?m making a faceted plot of a response on two categorical variables using ggplot2 and having troubles with the coloring. Here is a sample that produces the desired plot: compareCats <- function(data, res, fac1, fac2, colors) { require(ggplot2) p <- ggplot(data, aes(fac1, res)) + facet_grid(. ~ fac2) jit <- position_jitter(width = 0.1) p <- p +

Hello, unfortunately, I don't know a better subject. I would like to be very flexible in how to process my data. Assume the following dataset: par1 <- seq(0,1,length.out = 100) par2 <- seq(1,100) fac1 <- factor(rep(c("group1", "group2"), each = 50)) fac2 <- factor(rep(c("group3", "group4", "group5", "group6"), each =

Dear List, I am using function recode, from package car, within sapply, as follows: L3 <- LETTERS[1:3] (d <- data.frame(cbind(x = 1, y = 1:10), fac1 = sample(L3, 10, replace=TRUE), fac2 = sample(L3, 10, replace=TRUE), fac3 = sample(L3, 10, replace=TRUE))) str(d) d[, c("fac1", "fac2")] <- sapply(d[, c("fac1", "fac2")], recode, "c('A',

Dear R Users, I am trying to write a wrapper around summarize and xYplot from Hmisc and am having trouble understanding how to pass arguments from the function I am writing to the nested functions. There must be a way, but I have not been able to figure it out. An example is below. Any advice would be greatly appreciated. Thanks, Dan # some example data df=expand.grid(rep=1:4,

Dear all, I am fitting a glm to count data using poison errors with the log link. My goal is to test for the significance of model terms by calling the anova function on two nested models following the recommendation in Michael Crawley's guide to Statistical Computing. Without going into too much detail, essentially, I have a small overdispersion problem (errors do not fit the poisson

I've come across the following error when using free scales with bwplot (I use a small example data set just to illustrate the problem): > d <- data.frame( x=c(34.4, 12.4, NA, 65.3, NA, 12.0, 45.0, 645.0, 644.0,323.0), fac1=c('a','a','b','a','b','a','a','c','c','c'),

Hello Again R Folk: I have found items about this in the archives, but I?m still not getting it right. I want to use ggplot2 with facet_grid inside a function with user specified variables, for instance: p <- ggplot(data, aes_string(x = fac1, y = res)) + facet_grid(. ~ fac2) Where data, fac1, fac2 and res are arguments to the function. I have tried p <- ggplot(data,

Hey, hopefully there is an easy way to solve my problem. All that i think off is lengthy and clumsy. Given a data.frame d with columns VALUE, FAC1, FAC2, FAC3. Let FAC1 be something like experiment number, so that there are exactly the same number of rows for each level of FAC1 in the data.frame. Now i would like to scale all values according to the center of its experiment. So i can apply s

Hello. I know that lattice is still in beta beta but. . . Nick Ellis wrote to S-news with an example of 'trellis' with several lines in each panel. df<-expand.grid(fac1=letters[1:2],x=seq(0,1,0.1),fac2=LETTERS[1:4]) df$y<-df$x*codes(df$fac1)+codes(df$fac2)*df$x^2+rnorm(nrow(df))/3 xyplot(y ~ x | fac2, groups=fac1, data=df,

Hi all, Suppose the following data and the simple model y<-1:12+rnorm(12) fac1<-c(rep("A",4),rep("B",4),rep("C",4)) fac2<-rep(c("D","C"),6) dat<-data.frame(y,fac1,fac2) tmp<-aov(y~fac1+fac2,dat) the command tmp$coeff gives the fllowing results : (Intercept) fac1B fac1C fac2D 3.307888 2.898187 7.409010

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Hello, Using a fixed effects linear model (with lm), I can get exact p-values out of the AVOVA table, even if they are very small, eg. 1.0e-200. Using lme (linear mixed effects) from the nlme library, it appears that there is rounding of the p-values to zero, if the p-value is less than about 1.0e-16. Is there a way we can obtain the exact p-values from lme without rounding? used commands:

Hi all, I'm doing a Repeated-Measures ANOVA, but I don't know how to test its contrasts or where to find the p-values of its coefficients. I know how to find the coefficient estimates of a contrast, but not how to test these estimates. First I do something like: y.aov <- aov(y ~ fac1 * fac2 + Error(subj/(fac1 * fac2)), data=data) Then, with coef(y.aov) I get the coefficients

Dear R users, I'm a bit perplexed with the effect sort has here, as it is different on Windows vs. linux. It makes my factor levels and subsequent plots different on the two systems. Given: types <- c("PC-D-Euro-0", "PC-D-Euro-1", "PC-D-Euro-2", "PC-D-Euro-3", "PC-D-Euro-4", "PC-D-Euro-5", "PC-D-Euro-6",

Hi, I am trying to convert a colleague from using SPSS to R, but am having trouble generating a result that is similar enough to a bootstrapped cox regression analysis that was run in SPSS. I tried unsuccessfully with bootcens, but have had some success with the bootcov function in the rms package, which at least generates confidence intervals similar to what is observed in SPSS. However, the