Displaying 20 results from an estimated 30000 matches similar to: "ARM package for R 2.10.1"
2010 Apr 01
3
pvals.fnc() with language R does not work with R 2.10.1
Hi Everyone,
I am using R 2.10.1. lmer function works properly, however pvals.fnc
() does not despite the fact that I uploaded:
- library(lme4)
- library(coda)
- library(languageR)
This is the error message I get
pvals.fnc(lexdec3.lmerE2, nsim=10000)$fixed
Error in pvals.fnc(lexdec3.lmerE2, nsim = 10000) :
MCMC sampling is not yet implemented in lme4_0.999375
for models with random
2011 Dec 12
2
Problema para cargar "lme4" en R version 2.14.0
Hola,
Tenía una versión anterior de R, la 2.10.1 en la cual podía cargar perfectamente el paquete "lme4". Actualicé la versión del R a 2.14.0 y aún volviendo a descargar la nueva versión del paquete mencionado cuando intento cargarlo me da el siguiente error :
> library(lme4)
Error: package ‘lme4’ is not installed for ''arch=i386''
Hay alguna solución para esto o
2010 Feb 28
1
ubuntu hardy heron and lme4
I have R version 2.10.1 (2009-12-14) installed on Ubuntu HH (version 8.04)
I installed lme4 from the Ubuntu respository. When I executed the library(lme4)
command, R responds that lme4.so was not found.
I then uninstalled lme4 and tried again from cran. When the program tried to
compile, there was a message that -llapack could not be found, so the package
failed to install.
If I execute the
2010 Feb 02
1
lme4 package and gamma family
Hello,
I am trying to use the lmer function from the lme4 package I have installed
today (lme4_0.999375-32.zip; R-2.10.1). According to the information, I
should be able to use a generalized linear mixed model.
However when I try to fit a model with Gamma distribution of the errors, it
gives me the following error
model1<-lmer(Cmic~1+(1|FOREST/DEPTH),data=DATOS,family=Gamma)
Error en
2010 Jan 10
1
lme4 and function 'cholmod_start' not provided by package 'Matrix' / Ubuntu
Hello all,
Using Ubuntu 9.04 and R 2.8.1.
For a project I need to use the Zelig package, which in turn wants to
use the lme4 package. When trying to use Zelig and it tries to its required
packages I get the following error message.
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_start' not provided by package 'Matrix'
Error in loadModelDeps(model) :
2011 May 26
1
R-2.10.1 to R-2.13.0
Dear List,
I am currently running R-2.10.1. I wish to install R-2.13.0 or update my
R-2.10.1 to the R-2.13.0.
I have downloaded R-2.13.0 but wish to seek your advice before installing
that.
Please is there a better way of updating to the newer version other than
downloading and installing the version?
Thanks for your suggestions.
Ogbos
[[alternative HTML version deleted]]
2010 Feb 22
3
env() for lme4
I have been looking at a draft of Doug Bate's book on mixed effects models
(http://lme4.r-forge.r-project.org/book), and in chapter one (section "1.4.2
Matrices and Vectors in the Fitted Model Object", to be exact) he refers to the
function env() for checking the environment of a fitted lmer object. This
function does not appear under help, and I have not been able to find
2009 Aug 07
1
install package version compatible with on older version of R
Hi,
I'm trying to install Chipster (for microarray analysis:
http://chipster.csc.fi/), which expressly relies on R 2.6.1 (for now).
So I'd like to install automatically (i.e. using a 'install.packages'
like function) the last version of a package compatible with the running
R version.
For example, when I'm running R-2.6.1 and want to install package 'lme4'
I get
2010 Mar 20
5
Problem specifying Gamma distribution in lme4/glmer
Dear R and lme4 users-
I am trying to fit a mixed-effects model, with the glmer function in
lme4, to right-skewed, zero-inflated, non-normal data representing
understory grass and forb biomass (continuous) as a function of tree
density (indicated by leaf-area). Thus, I have tried to specify a
Gamma distribution with a log-link function but consistently receive
an error as follows:
>
2009 Jun 10
1
Unable to load package:lme4 [ Ubuntu 9.04 ]
Hi folks,
When I try to load package 'lme4' on my Linux box (64-bit Ubuntu
9.04), I get the following error:
-------------------------------------
> library(lme4)
Error in dyn.load(file, DLLpath = DLLpath, ...) :
function 'cholmod_start' not provided by package 'Matrix'
Error: package/namespace load failed for 'lme4'
------------------------------------
I
2010 Mar 12
1
Problem installing new packages
Hi everyone,
Using R 2.10.1 on Windows Vista.
DOWNLOADED PACKAGES DO NOT INSTALL. I expect to see them in C:\Program
Files\R\R-2.10.1\library These files download (see below). And they are
all in zip format. What am I doing wrong? Please help. All suggestions
appreciated.
trying URL
'http://cran.cnr.Berkeley.edu/bin/windows/contrib/2.10/RColorBrewer_1.0-2.zip'
Content type
2013 Feb 05
1
How to use summary.mer inside a package?
I have a question regarding the build of my project papeR (hosted on
R-forge http://r-forge.r-project.org/R/?group_id=1574) with respect to
lme4.
Both, Windows and MacOS are complaining that lme4 doesn't export summary:
Error : object 'summary' is not exported by 'namespace:lme4'
ERROR: lazy loading failed for package 'papeR'
Linux however builds the project
2005 Jan 24
1
package dependency error on loading lme4
Hi all,
I recently (today) updated the Matrix package and installed the latticeExtra
package, but then when I tried to load the lme4 package, I got the following
error message:-
> library(lme4)
Loading required package: Matrix
Loading required package: latticeExtra
Error in importIntoEnv(impenv, impnames, ns, impvars) :
object(s) '.__C__lmeRep' are not exported by
2005 Dec 09
1
Residuals from GLMMs in the lme4 package
Hello there
This is the first time I have used r-help message board so I hope I have got
the right address.
I am trying to check the residuals of a GLMM model(run using the package
lme4). I have been able to check the residiuals of REMLs in lme4 using the
following:
m1<-lmer(vTotal~Week+fCollar+ (1|fCat), collars)
res<-resid(m1)
plot(res)
qqnorm(res)
library(MASS)
par(mfrow=c(2,3))
2013 Jun 28
3
problem with eval(..., parent.frame(1L)) when package is not loaded
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
The lmer() function in the lme4 package has some code of the form
mc <- match.call()
mc[[1]] <- as.name("lFormula")
lmod <- eval(mc, parent.frame(1L))
this is a fairly common idiom in R, found e.g. in lm(), used when
one wants to pass all of the arguments of a function to a different
function (in the case of lm() it's
2008 Mar 04
2
package for repeated measures ANOVA with various link functions
R 2.6.0
Windows XP
At the risk of raising the ire of the R gods . . .
I am looking for a package that will allow me to perform a poisson, quasipoisson, or negative binomial regression with adjustment for repeated measures. I have looked at glm, it does not appear to allow repeated measures. Although I can't get any help for lme or lme4 I remember that those packages perform repeated measures
2005 Jan 03
1
different DF in package nlme and lme4
Hi all
I tried to reproduce an example with lme and used the Orthodont
dataset.
library(nlme)
fm2a.1 <- lme(distance ~ age + Sex, data = Orthodont, random = ~ 1 | Subject)
anova(fm2a.1)
> numDF denDF F-value p-value
> (Intercept) 1 80 4123.156 <.0001
> age 1 80 114.838 <.0001
> Sex 1 25 9.292 0.0054
or alternatively
2009 Jul 29
3
Installing lme4 package in Windows Vista
Hi all,
I have a problem with package installing in Windows, on my PC machine. The
end goal is to be able to use the lme() function. Here's what I did so far:
> install.packages("lme4")
Warning in install.packages("lme4") :
argument 'lib' is missing: using
'C:\Users\Angela\Documents/R/win-library/2.9'
--- Please select a CRAN mirror for use in this
2013 Mar 21
1
Error message installing package R package
I am getting error messages while installing R package lme4. Please advice
thanks
Pramod
trying URL 'http://cran.mtu.edu/src/contrib/lme4_0.999999-0.tar.gz'
Content type 'application/x-gzip' length 1074142 bytes (1.0 Mb)
opened URL
==================================================
downloaded 1.0 Mb
* installing *source* package 'lme4' ...
** package
2012 Oct 13
2
Function hatTrace in package lme4
Dear all,
For a project I need to calculate the conditional AIC of a mixed effects
model.
Luckily, I found a reference in the R help forum for a function to be used:
CAIC <- function(model) {
sigma <- attr(VarCorr(model), 'sc')
observed <- attr(model, 'y')
predicted <- fitted(model)
cond.loglik <- sum(dnorm(observed,