similar to: latex, eps graphics and transparent colors

Hi I made heatmap of QTL based on Lod score. Where I have traits in columns and marker data (rows). I can not cluster both column and rows as I need the right order for marker data. Can someone suggest me better way of generating heatmaps especially the colour key I want to select to visualize the results which are more interesting to look at. > library(gplots) >

Dear R-community It would be nice to get some input how to find a solution for the following error in igraph and vertex setting. Thank you very much Sibylle > par(bg="black") > network %>% plot( + vertex.color=clrs[V(.)$community], + vertex.size=V(.)$hub_score*1, + vertex.frame.color=V(.)$color, + vertex.label.color="white", +

Hi, first of all, your example was not reproducible! But once I added "library(igraph)" and "library(scico)" plus generally replaced "aes_collapsed" by "edge_list", I started to work :-) Anyway, the error is produced by this line: + edge.width= network, It seems to me that you have forgotten to name a variable here (you now use the whole network

The reason html is specifically advised against as a format is that it does things like mangling data such as is happening in your example. You should repost using settings on you mail client for plain-text. Your code should start by loading necessary packages. You should also not post screen output versions of code since that will insert lots of superfluous "+"'s. Some but not

Hi again, your code is still not reproducible without modifications, but I succeed in getting the data straight. All read.csv-command are missing 'sep="\t"', it is need to read you tsv-data. And it could be more reproducible if you used e.g. --- snip --- aes<-read.csv(text=" A.A B.B C.C D.D E.E F.F A.A 0 0 5 5 5 5 B.B 4 0 1 1 1 1 C.C 5 5 0 5 4 2 D.D 5 0 5 0 5 3 E.E

On 2/24/24 12:10, Kimmo Elo wrote: > Hi, > > first of all, your example was not reproducible! But once I added > "library(igraph)" and "library(scico)" plus generally replaced > "aes_collapsed" by "edge_list", I started to work :-) After copying your lead in that replacement the error I got was: network <-

Dear coummunity Thanks a lot to David and Kimmo. Yes I see now that I need to provide the two raw tables. Find here the reproducible example. Kind regards Sibylle # R-labraries library(circlize) library(ggplot2) library(igraph) library(tidyverse) library(RColorBrewer) library(stringi) library(scico) library(plotly) library(ggraph) # Tables aes<-read.csv("Test_adjac.csv",

Hi, a quick additional note: try "edge.width= E(.)$weight" instead of the current "edge.width= network". Seems to work and makes a visible difference... HTH, Kimmo su, 2024-02-25 kello 19:11 +0000, Kimmo Elo kirjoitti: > > Hi again, > > your code is still not reproducible without modifications, but I > succeed in getting the data straight. All

Dear community Find enclosed the full working example. Many thanks Sibylle Test_cat.csv Names Subcategory_type sources.cyto source Factor A.A material "A" A 1 B.B material "B" B 1 C.C regulation "C" C 1 D.D regulation "D" D 1 E.E habitat "E" E 1 F.F cultural "F" F 1 Test_adjac.csv

Dear Sibylle, your example is not working! E.g. no data for "aes_collapsed". Best, Kimmo ke, 2024-03-20 kello 19:28 +0100, SIBYLLE ST?CKLI via R-help kirjoitti: > Dear community > > I am using ggraph to plot a network analysis. See part 2 in the working > example. > Besides different colors for different groups of nodes: > --> geom_node_point(aes(size =

Hi, this seems to work (assuming that your problem was the setting of colours...): --- snip --- network %>% ggraph(., layout = "auto") + # This produces an error... # geom_edge_arc(curvature=0.3, aes(width=(E(network)$weight/10), color=c("darkblue", "red")[as.factor(edge_list$relationship)], alpha=0.5)) + # ... this works :-)

Dear community I am using ggraph to plot a network analysis. See part 2 in the working example. Besides different colors for different groups of nodes: --> geom_node_point(aes(size = V(network)$hub_score*200, color= as.factor(V(network)$community))) I additionally want to consider different colors for different edge groups The grouping is defined in the edge_list$relationship: negative

HI @ all, I'm looking for a simple solution to supress the y-axis - but only the drawn scale - not the values. Only the numbers should be displayed. I tried yaxt="n" but there everything of the y-axis is supressed. Thanks GeO -- View this message in context: http://r.789695.n4.nabble.com/no-y-axis-tp4649298.html Sent from the R help mailing list archive at Nabble.com.

Buenas. Sé que en R hay multitud de datasets y me haría falta alguno que trataran de variables relacionadas con salud, sobre todo para aprender más acerca de cómo realizar una regresión logística binomial o multinomial. Gracias..

Dear fellow R users, I would like to draw a "sunflowerplot" because I have data (decade by month) that plots multiple times on the same x-y co-ordinates. Further I would like to colour each of the points/sunflower leaves on the plot according to the group they belong to (i.e. which type of event each represents within that decade and month). I thought that this would be relatively

This may be elementary, but I can't find an answer: How can I set up global options for some specific arguments to functions in a package which can be easily changed by the user? This question relates to the selection of colors used in functions in several packages (heplots, genridge), where I want to provide reasonable default values for plots, but allow users to change those defaults

I have some code as shown below. Basically, I would like three boxplots to be set next to each other with no ylabels on the two "inner" plots, and I want the same x axis range on all three. However, it seems like boxplot does not respect the xlim setting. I've tried the various ways I thought would work (par, boxplot(...xlim=)) but none of them seem to work. I then tried plot.window,

Hola, ¿hay alguna forma de colocar la leyenda de un gráfico sin que se superponga con las barras de mi gráfico? Os dejo mi ejemplo para que me entendáis: ## dado_1<-sample(1:6,1200,replace=T)dado_2<-sample(1:6,1200,replace=T)dado_3<-sample(1:6,1200,replace=T) dados<-matrix(c(table(dado_1),table(dado_2),table(dado_3)),6) barplot(t(dados),beside=TRUE,ylab="Frecuencias

I need to do something like this node foo { $iface = pcn0 ... } # the template <%= network_<%= iface %> %>/<% netmask_<%= iface %> %> The idea being that a file would be built on the client holding the value of pcn0''s network/netmask Of course, I''m trying to avoid hard coding the interface name in order to keep my code portable. Thanks in advance

Hi, i created a set of graphs and want to find out how to swap the bar colours (from white to black) and set it to be default for all graph that i will produce (f.e. for different number of columns). some sugggestions? thanks in advance. here is an example: ############################## a <-read.table("http://www.scandinavia.sk/data/R/kotlina1.csv", sep=";", header=T)