Displaying 20 results from an estimated 7000 matches similar to: "Problem with R, MKL, and Ubuntu 11.04"
2015 Sep 04
1
Build R with MKL and ICC
On Fri, Sep 4, 2015, 9:24 AM Bj?rn-Helge Mevik <b.h.mevik at usit.uio.no>
wrote:
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about
2015 Sep 04
0
Build R with MKL and ICC
arnaud gaboury <arnaud.gaboury at gmail.com> writes:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is correct, I would appreciate some
2015 Aug 24
3
Build optimized R : openblas, MKL, ATLAS
On Mon, Aug 24, 2015 at 11:29 AM, Bj?rn-Helge Mevik
<b.h.mevik at usit.uio.no> wrote:
> arnaud gaboury <arnaud.gaboury at gmail.com> writes:
>
>> - Intel MKL: this is part of Intel Parallel Studio and is a paid
>> software. Now, there is the MKL package distributed by
>> Revolutionanalytics, but I am not certain how this can be distributed
>> for free. Is
2015 Sep 07
2
Build R with MKL and ICC
On Sat, 2015-09-05 at 11:53 +0200, arnaud gaboury wrote:
> On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> > On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> >> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> >> > After a few days of reading and headache, I finally gave a try at
2017 Apr 21
1
Intel MKL compiling issue
> I would appreciate any insights over compiling R 3.4 with Intel MKL -- I have been successful until R 3.3.3 but now it stops complaining about pcre though it worked without Intel MKL as follows,
I successfully built R-rc_2017-04-19_r72555.tar.gz with icc & MKL on centos 7 with this:
# https://software.intel.com/en-us/articles/build-r-301-with-intel-c-compiler-and-intel-mkl-on-linux#
2015 Sep 02
0
Build R with MKL and ICC
On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> After a few days of reading and headache, I finally gave a try at
> building R from source with Intel MKL and ICC. Documentation and posts
> on this topic are rather incomplete, sometime fantasist et do not give
> much explanations about configure options.
> As I am not sure if mine is
2015 Sep 05
0
Build R with MKL and ICC
On Fri, Sep 4, 2015 at 5:58 PM, Martyn Plummer <plummerm at iarc.fr> wrote:
> On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
>> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
>> > After a few days of reading and headache, I finally gave a try at
>> > building R from source with Intel MKL and ICC. Documentation
2015 Sep 30
1
Build R with MKL and ICC
On Tue, Sep 29, 2015 at 8:11 PM, Nathan Kurz <nate at verse.com> wrote:
> Hi Arnaud --
>
> I'm glad it's working for you. I'm not sure I understand your final
> answer. Are you saying that the version I posted worked for you as
> given, or that you had to remove some of the other options?
I say it works perfectly when using the single dynamic library
(lmkl_rt):
2020 Jun 25
0
R 4.0.1-4.0.2 built with Intel Composer 19.0-19.1.1, error in "make check" on CentOS 7.7
Ryan Novosielski <novosirj at rutgers.edu> writes:
> Hi there,
>
> I initially asked about this on r-help and was told this might be a better venue. I?m not really convinced from reading the posting guide, but I?ll give it a shot. It was also suggested that the R-Project doesn?t really care about building with ?non-standard? compilers, but I can?t find any evidence of that on the
2012 Nov 28
0
compiling R for Windows with Intel compiliers and MKL
Hello,
I want to compile R-2.15.2 for Windows with Intel compilers and MKL(
BLAS, LAPACK).
I installed 'Rtools 2.16.0.1923' and follow the instructions of "R
installation and administration" guide (3.1; A.3.1.4; C.2.2).
I configured "/src/gnuwin32/MkRules.local" and "config.site" according
to needed environmental variables (icc, ifort, icpc, mkl..)
When
2012 Sep 21
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago I noted that using the configure switch
--enable-R-shlib when buildig R made configure ignore any specified
external LAPACK library (I cannot recall if also the BLAS specification
was ignored) and use the internal one insted. I asked why, and was told
it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run
2012 Oct 19
0
--enable-R-shlib and external BLAS/LAPACK libraries
A couple of years ago (in 2008, using R 2.7.x, I believe) I noted that
using the configure switch --enable-R-shlib when buildig R made
configure ignore any specified external LAPACK library and use the
internal one insted. I asked why, and was told it was intentional.
Now, with R 2.15.1, I see that it at least appears that this is no
longer the case. I've run configure like this:
2015 Sep 29
2
Build R with MKL and ICC
On Wed, Sep 9, 2015 at 11:26 PM, Nathan Kurz <nate at verse.com> wrote:
>
> As a short and simple approach, I just compiled the current R release
> on Ubuntu with ICC and MKL using just this:
>
> $ tar -xzf R-3.2.2.tar.gz
> $ cd R-3.2.2
> $ CC=icc CXX=icpc AR=xiar LD=xild CFLAGS="-g -O3 -xHost" CXXFLAGS="-g
> -O3 -xHost" ./configure
2015 Sep 02
4
Build R with MKL and ICC
After a few days of reading and headache, I finally gave a try at
building R from source with Intel MKL and ICC. Documentation and posts
on this topic are rather incomplete, sometime fantasist et do not give
much explanations about configure options.
As I am not sure if mine is correct, I would appreciate some advices and hints.
OS: Fedora 22
parallel_studio_xe_2016
Hardware : 8 Thread(s) per
2015 Sep 04
2
Build R with MKL and ICC
On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote:
> On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote:
> > After a few days of reading and headache, I finally gave a try at
> > building R from source with Intel MKL and ICC. Documentation and posts
> > on this topic are rather incomplete, sometime fantasist et do not give
> >
2012 Jan 11
1
R error in make check
Hi,
After building R 2.14.1 on a Linux system (SUSE Linux Enterprise Server
11 (x86_64) ), I ran "make check" but it halted with the foll error:
Testing examples for package ?base?
Error: testing 'base' failed
Execution halted
I looked in <build dir>/test/Examples/base-Ex.Rout.fail and found the foll:
*******EXCERPT *****
...
> ### ------- Pickyness Flags :
2012 Dec 28
1
linux multi-threaded compilation is running only on one processor
Hello,
I compiled R-2.15.2 with linux intel compilers (see below).
when I execute some R code on a // 4 proc x 4 cores // server
(export MKL_NUM_THREADS = 16)
very often I have the situations where only one processor (4 cores) is
active instead of 4 (16 cores) !
do you know this fact depends on what ?
thank you !
P.S.
many functions of R are single-threaded,
is there a simple way to make them
2005 Dec 01
0
tuned BLAS
I've been updating the information on tuned BLAS for R-admin in R-patched
and R-devel. We have
ATLAS (widely available, including for Windows)
MKL (licensed on ix86 and x86_64 Linux and Windows)
ACML (by AMD, but for all ix86 and x86_64 chips, Linux and Windows.
Now available for gfortran.)
Goto (academic use only, only some chips, only Linux)
MKL and ACML provide full LAPACK,
2014 Oct 22
1
"make check" fails on lapack.R and stats-Ex.R
Hi folks,
I suspect this is a request for a sanity check than a bug report:
I've been successfully compiling an optimised version of R for several years using the Intel compiler and MKL. I've just test-run the new Intel 15.0 compiler suite, and I'm seeing a few numeric failures that I don't see using the same build method with Intel 13.0. I've attached the output of
2008 Apr 18
1
configure can't find dgemm in MKL10
Hi,
I'm trying to follow the R-admin instructions for using MKL10 as the external BLAS compiling R-2.6.2 under Linux on a RH EL head node of a cluster. The configure process seems to have problems when it checks for dgemm in the BLAS. I'm using configure as:
./configure CC=icc F77=ifort --with-lapack="$MKL" --with-blas="$MKL" where $MKL is defined as in R-admin