similar to: Error in X11

Hi everybody, I am a beginner in the steps of pre-processing and data analysis of non-targeted metabolomic profiling experiments. Anyone knows if there exists some tool for normalizing this type of data (raw data or XCMS matrix data) in R repositories? Many thanks in advance. Best regards, Núria ------------------------------------------------------- Núria Queralt

Hi all, When I ran a script containing the following codes: png(paste(savepath,"a_rnaplot.png",sep = ""),width = fwidth, height = fheight,pointsize = fpointsize); data_deg <- AffyRNAdeg(data_cel) plotAffyRNAdeg(data_deg,col=cols,lty=1,lwd = "2") #a <- par("fin") legend("bottomright",sampleNames(data_cel),col=cols,lty=1)

I am trying to run R from an apache C++ module in a shell script to plot some data to display it in apache later. I get the error (reported in apache's logs): Xlib: connection to ":0.0" refused by server Xlib: No protocol specified Error in X11(paste("png::", filename, sep = ""), width, height, pointsize, : unable to start device PNG In addition: Warning

Hi there, I want to run an R script on a cluster with qsub. Obviously I don't want to display any X window, but I want use png() or something else to write out images. Unfortunately I get the following error message: > png(filename = " ALL.png", width = 480, height = 480, pointsize = 12, bg = "white", res = NA) Error in X11(paste("png::", filename,

Dear All, I have never had this problem before. I run debian testing on my box and I have recently update my R environment. Now, see what happens when I try the most trivial of all plots > plot(seq(22)) Error in (function (display = "", width, height, pointsize, gamma, bg, : X11 module cannot be loaded In addition: Warning message: In (function (display = "", width,

Hi, I run R on a unix server and login from a Mac with ssh -X. When I want to run a graphics function like hist, I get the following x11 message: Error in X11(d$display, d$width, d$height, d$pointsize, d$gamma, d$colortype,  :    unable to start device X11cairo In addition: Warning message: In function (display = "", width, height, pointsize, gamma, bg,  :   unable to open connection to

Hello, I installed R--2-1.14.1.pkg on mac OS v 10.7.2 and when I wanted to invoke hist, I got the following error msg: Error in title(main = main, sub = sub, xlab = xlab, ylab = ylab, ...) :? ? could not find any X11 fonts Check that the Font Path is correct. In addition: Warning messages: 1: In function (display = "", width, height, pointsize, gamma, bg, ?: ? locale not supported by

I don't have my debian box available so can't confirm. But I would try $apt-get install libpng On Tue, Apr 19, 2016 at 11:23 AM, Lorenzo Isella <lorenzo.isella at gmail.com> wrote: > Dear All, > I have never had this problem before. I run debian testing on my box > and I have recently update my R environment. > Now, see what happens when I try the most trivial of all

Hin-Tak Leung wrote: > Peter Dalgaard wrote: >> brechbuehler at gmail.com wrote: >>> Full_Name: Christian Brechbuehler >>> Version: 2.4.1, 2.5.1, OS: Ubuntu GNU/Linux >>> Submission from: (NULL) (24.61.47.236) >>> >>> > <snipped> >>> Example (start R without DISPLAY from bash): >>> % DISPLAY=3D R >>> >

Full_Name: Stephane Bonneaud Version: 2.6.2 OS: OSX - Leopard 10.5.2 Submission from: (NULL) (195.221.233.130) Hello, I have a R code file containing the following code: ------- # This code is in r2jpg.r # myData is filled here with some data from a file jpeg(filename="test.jpg",width=960,height=720,pointsize=16,quality=100) plot(myData,xlab="anything",

I view plots on my screen with X11(width=.455*11, height=.455*8.5), which creates a small window with the American standard aspect ratio. Under R-2.0.1 and earlier, the default fonts were a reasonable size, but under R-2.1.0 they are too big and fat. I now have to either set pointsize=10 in X11(), or par(cex=.7) afterwards. The NEWS file has this to say about X11 fonts: The changes to font

Hola buenas, Actualmente me hayo haciendo unas gráficas que han de tener un tamaño de letra determinado. Para ello empleo los parametros ps de las funciones x11() y en par(). Mientras hago gráficas de uno y gráficas de dos plots todo va bien. Pego las gráficas en power point y veo que las gráficas son del tamaño recomendado (pego una caja de texto y compruebo que todo es correcto de manera

Hi, I got this error while using png() function in RedHat 9.0. "Error in X11(paste("png::", filename, sep = ""), width, height, pointsize unable to start device PNG" It looks like the system lacks some library for graphics. Can anyone tell me which rpm I should install to have png() function work with out problem? Thanks ...

Dear List, I am a new Mac user and I am having problem generating png (or jpeg) using the GUI version of R. I installed R-2.3.1.dmg (custom install with everything selected) and X11User.pkg but I am still getting the following X11 connection error when I try to generate a png (or a jpeg): Error in X11(paste("png::", filename, sep = ""), width, height, pointsize, :

In postscript graphs (pointsize = 10, different sizes in graph adjusted via cex) I would like to use different font sizes but get the following warning message: Warning messages: 1: X11 used font size 8 when 9 was requested 2: X11 used font size 8 when 7 was requested 3: X11 used font size 8 when 5 was requested This is probably not a R but a X11 problem, nevertheless I would be most

Hi, I upgraded my system from FC4 to FC5. So now I have R version 2.5.0 (2007-04-23). But I ran into a problem with starting device X11 (message below). > X11() can't find X11 font Error in X11(display, width, height, pointsize, if (is.null(gamma)) 1 else gamma, : unable to start device X11 Any idea? Thanks, L. -- Li-Jung Liang, Ph.D. Department of Biostatistics UCLA

I've been accustomed to specifying a postscript file and pointsize like so: trellis.device(postscript, file = "something.ps", pointsize = 8) Using version _ platform i686-pc-linux-gnu arch i686 os linux-gnu system i686, linux-gnu status major 1 minor 9.0 year 2004

Hello, I am having some problems with the X11 display in a gentoo linux laptop with R compiled manually. (https://stat.ethz.ch/pipermail/r-help/2006-March/089701.html) Whether I can open the X11 device and use it when I am using 'ion' as a window manager, I can't open it using 'gnome', due to a problem related to fonts: -----8<--------------- Error in X11() : could not

Hi all, I'm having trouble getting x11 to work with R. (This is on Debian testing.) I installed r-base and r-base-dev, and then r-cran-cairodevice. I also tried installing the Cairo package within R, which appears to work fine. This what I'm seeing: > capabilities() jpeg png tiff tcltk X11 aqua http/ftp sockets TRUE TRUE TRUE TRUE

Hello, I'm trying to run R from a webserver, which doesn't have an X server, and produce pngs to go on a webpage, is this possible? I'm doing it in gnuplot with gnuplot> set term png gnuplot> set output With $DISPLAY unset, I get the following error from R: > png() Error in X11(paste("png::", filename, sep = ""), width, height, pointsize, :