similar to: AR & Confidence interval

I am trying to add confidence (error) bars to lattice barcharts (and dotplots, and xyplots). I found this helpful message from Deepayan Sarkar and based teh code below on it: http://finzi.psych.upenn.edu/R/Rhelp02a/archive/50299.html However, I can't get it to work with groups, as illustrated. I am sure I am missing something elementary, but I am unsure what. Using R 2.1.1 on various

Dear all, I am trying to plot KM curves with confidence bands with function survplot under package rms. However, the following codes do not seem to work. The KM curves are produced, but the confidence bands are not there. Any insights? Thanks in advance. library(rms) ########data generation############ n <- 1000 set.seed(731) age <- 50 + 12*rnorm(n) label(age) <- "Age"

Please note is with replacement From: taby gathoni <tabieg@yahoo.com> To: R help <r-help@r-project.org> Sent: Thursday, March 10, 2011 11:53 AM Subject: [R] random sampling steps in R Dear all, Could someone assist me in random sampling steps/code in R? I have a main sample of 42 males and 165 females and I want to come up with about 1000 samples of 20 males and 20 females from

I have two questions related to plotting predicted values for a linear mixed model using xyplot: 1: With a groups= argument, I can't seem to get the key to appear inside the xyplot. (I have the Lattice book, but don't find an example that actually does this.) 2: With lme(), how can I generate confidence bands or prediction intervals around the fitted values? Once I get them, I'd

Say I fit a logistic model and want to calculate an odds ratio between 2 sets of predictors. It is easy to obtain the difference in the predicted logodds using the predict() function, and thus get a point-estimate OR. But I can't see how to obtain the confidence interval for such an OR. For example: model <- glm(chd ~age.cat + male + lowed, family=binomial(logit)) pred1 <-

I wonder if anyone know why survest (a function in Design package) and standard survfit.coxph (survival) returned different confidence intervals on survival probability estimation (say 5 year). I am trying to estimate the 5-year survival probability on a continuous predictor (e.g. Age in this case). Here is what I did based on an example in "help cph". The 95% confidence intervals

Dear all, Could someone assist me in random sampling steps/code in R? I have a main sample of 42 males and 165 females and I want to come up with about 1000 samples of 20 males and 20 females from this main sample. While at it, i would also like to come up Accuracy Ratios (ARs) with corresponding confidence intervals. Please assist. Thanks so much, Taby [[alternative HTML version

Could someone explain the summary(cph.object)? The example is in the help file of cph. n <- 1000 set.seed(731) age <- 50 + 12*rnorm(n) label(age) <- "Age" sex <- factor(sample(c('Male','Female'), n, rep=TRUE, prob=c(.6, .4))) cens <- 15*runif(n) h <- .02*exp(.04*(age-50)+.8*(sex=='Female')) dt <- -log(runif(n))/h label(dt)

One of the products of Project MOSAIC (funded by an NSF CCLI grant) has been the development of an R package with the goal of making it easier to use R, especially in teaching situations. We're not quite ready to declare that we've reached version 1.0, but version 0.4 does represent a fairly large step in that direction. You can find out more about the package on CRAN or by installing

One of the products of Project MOSAIC (funded by an NSF CCLI grant) has been the development of an R package with the goal of making it easier to use R, especially in teaching situations. We're not quite ready to declare that we've reached version 1.0, but version 0.4 does represent a fairly large step in that direction. You can find out more about the package on CRAN or by installing

Dear R-users, I computed a simple coxph model and plotted survival over time with associated confidence intervals for 2 covariate levels (males and females). M1 <- coxph(survobject~sex, data=surv) M1 survsex <- survfit(survobject~sex,data=surv) summary(survsex) plot(survsex, conf.int=T, col=c("black","red"), lty = c(1,2), lwd=c(1,2), xlab="Time",

Dear list, I have following data set, which I want to plot the "Scale" variable on the x-axis and "Mean"´on the y-axis for each Ageclass and for each sex. The Mean value of each Ageclass for each sex would be connected by a line. Totally, there should be 6 lines, from which three present the Mean values of each Ageclass for respective sex. Are there any easy ways to do

Assume that we collect below data : - subjects = 20 males + 20 females, every single individual is independence, and difference events = 1, 2, 3... n covariates = 4 blood types A, B, AB, O http://r.789695.n4.nabble.com/file/n4245397/CodeCogsEqn.jpeg ?m = hazards rates for male ?n = hazards rates for female Wm = Wn x ?, frailty for males, where ? is the edge ratio of male compare to female Wn =

Dear R-helpers I have a question related to logistic GAM models. Consider the following example: # Load package library(mgcv) # Simulation of dataset n <- 1000 set.seed(0) age <- rnorm(n, 50, 10) blood.pressure <- rnorm(n, 120, 15) cholesterol <- rnorm(n, 200, 25) sex <- factor(sample(c('female','male'), n,TRUE)) L <-

Hello R-users/experts, I am new to R- I have a simple question: Let say I have a data set as follows temp:[file attached] the data structure is a follows: sex age female 28 female 53 female 53 female 36 male 42 male 29 male 43 male 36 male 41 Here we are grouping all male value into male and all female value in to female

Dear all, This relatively routine analysis has left me frustrated and in a rut. I have a dataset (data1), which I subset in order to remove rows where HabitatDensity="Med". This dataset looks correct when I call it up, however, when I create a table out of the new subset (data2), my table continues to show the "Med" information as 0. This is a problem because I need a

Hi All, I have the data like this : >sample <- read.csv(file="sample.csv",sep=",",header=TRUE) > sample stdate Domain sex age Login 1 01/11/09 xxx FeMale 25 2 2 01/11/09 xxx FeMale 35 4 3 01/11/09 xxx Male 18 30 4 01/11/09 xxx Male 31 3 5 02/11/09 xxx Male 32 11 6 02/11/09 xxx Male 31 1 7 02/11/09

Hi I have a data frame with rows specifying companies (codes are assigned to companies) and columns specify months (monthly data). The data is based on male (M) and female (F) information for each month. Following is an example of how my data looks like: 01 02 03 04 001 M M M na 001 F M M M 002 M na F F 003 F F F M 003 F F M na 003 M

Hi all, I have data like this: >sample <- read.csv(file="sample.csv",sep=",",header=TRUE) > sample stdate Domain sex age Login 1 01/11/09 xxx FeMale 25 2 2 01/11/09 xxx FeMale 35 4 3 01/11/09 xxx Male 18 30 4 01/11/09 xxx Male 31 3 5 02/11/09 xxx Male 32 11 6 02/11/09 xxx Male 31 1 7 02/11/09

The data is in the attachment. What I wanna get is: , , Sex = Male Eye Hair Brown Blue Hazel Green Black 32 11 10 3 Brown 53 50 25 15 Red 10 10 7 7 Blond 3 30 5 8 , , Sex = Female Eye Hair Brown Blue Hazel Green Black 36 9 5 2 Brown 66 34 29 14 Red 16 7 7 7 Blond 4