similar to: Problems getting html files out of R CMD check

Dear developers, I came across with a bug while parsing Rd files. Given is the following minimal Rd file: ---- \name{foo} \title{foo} \description{ #ifdef windows win #endifd #ifdef unix unix #endif } ---- By accident I have a typo at line 6, instead of having #endif I typed #endifd. If I run checkRd(), parse_Rd(), Rd2HTML(), or others including the command line "R CMD Rconv" R

Hi, I'm trying to build a modified version of the package RSvgDevice, without warnings. I'm having troubles with the description file. Here's the logs : * checking Rd files ... WARNING prepare_Rd: RSvgDevice.Rd:1: All text must be in a section But the RSvgDevice.Rd file seems OKto me, what am I missing ? Thanks for your help, Matthieu Decorde -- Matthieu Decorde,

I would like to create \examples{} in the manual dynamically, and while it is possible to do this with a \Sexpr at the top level, R CMD check issues a warning for it. (See below.) Is it intentional that \Sexpr is not allowed at the top level? The Rd grammar allows this, but R CMD check does not. Is there any other way to generate/modify the \examples{} section dynamically? Thanks, Gabor In

I'm encountering problems when making lazy-loadable databases of the output from 'parse_Rd'. The lazy-load database is of seemingly limitless size when I try to reload it... Admittedly I am using functions that I'm not really supposed to use, which is why this isn't a bug report, but there does seem to be something strange going on; my code is very similar to code that lives

Hi all, I am trying to use \Sexpr{} within \examples{} in the manual, and it all works fine, except that I get an error and then a NOTE from R CMD check when it checks for long lines in the manual. The long line check calls `Rd2txt` with fragment = TRUE, because it only checks the \usage{} and \examples{} sections, but fragment = TRUE does not evaluate \Sexpr{}, and then an unevaluated \Sexpr{}

Dear useRs, I am trying to build my package (nonpareff) which deals with some models of data envelopment analysis. The building worked well, but checking complains when it tests examples. Zipped nonparaeff.Rcheck is attached. Following is the log. --------------------------------------------- arecibo:tmp arecibo$ R CMD build nonparaeff/ * checking for file 'nonparaeff/DESCRIPTION' ...

Dear list, I have been checking my package ('analogue') using R2.13-0-alpha (details of exact svn version appended below) and the R CMD check procedure is generating an error rebuilding a vignette in the package, which raises a NOTE in the check. The log printed to screen during check shows: .... * checking re-building of vignettes ... NOTE Error in re-building vignettes: ... Error in

Hi there, I hope you have time to read this question and offer a suggestion or two. My basic question is this: I have data in sets of three. I would like to combine the data from each set, perform a function (probably just taking the median and MAD), then re-assign these values to each of the original sets of data. As a bit of background, I have performed a microscopy screen and analyzed

Hi, While using R CMD check I get the following Latex error message which occurs when creating PDF version of manual: LaTex error: File `inconsolata.sty' not found I am using Windows 7 (64-bit) and R 3.0.1. I have MikTex 2.9. I see that the incosolata.sty is present under \doc\fonts folder. How can I eliminate this problem? Thanks, Ravi [[alternative HTML version deleted]]

Hi, I have made a tiny package for saving dataframes in ASCII format. The package contains functions save.table() and save.delim(), the first mimics (not completely) write.table() and the second uses just different default values, suitable for read.delim(). The reason I have written the functions is that I have had problems with saving large dataframes in ASCII form. write.table() essentially

Dear useRs, I am trying to build my package (nonpareff) which deals with some models of data envelopment analysis. The building worked well, but checking complains when it tests examples. Zipped nonparaeff.Rcheck is attached. Following is the log. --------------------------------------------- arecibo:tmp arecibo$ R CMD build nonparaeff/ * checking for file 'nonparaeff/DESCRIPTION' ...

The package.skeleton() base function is useful for creating empty packages. The fact that the help files generated by the function cause errors was long an annoyance, but I noticed last month (while preparing for a workshop on R and packages) that it creates packages which cause 'R CMD check ...' to die in error. Which is always a bug. I just verified that it still dies in error under

On 2015-12-18 02:29, Simon Urbanek wrote: > Michael, > > I got access to PDP AIX so I can try to replicate your problem. Can you, please, share exactly your setup - AIX version and well as how exactly you installed the compilers (=where from)? I can then try to replicate it. AFAICS there is no official binary for gfortran nor gcc 4.7 so it must be some 3rd party - which could also be a

I have been struggling with this error message - and think I finally understand it's context. Start Line by line debugging shows me the function works: ... > saveRDS(val, mapfile) > val $variables $variables$IANA_HTTP_status_code_db [1] 0 1256 $variables$IANA_URI_scheme_db [1] 1256 3458 $variables$table_of_HTTP_status_codes [1] 4714 830 $references named list() $compressed

Hi, Sorry about making this stupid question, but I did not find the answer from documentation. I managed to read my spss .sav file into the R, no problem. Next I would like to write this data to a file in ascii-format. I tried to use write.table and I got no error messages, but no file either. What is the right way to make it? At least write.table("c:\foo\data.dat") does not

A friend of mine recently mentioned that he had painlessly imported a data file with 8 columns and 500,000 rows into matlab. When I tried the same thing in R (both Unix and Windows variants) I had little success. The Windows version hung for a very long time, until I eventually more or less ran out of virtual memory; I tried to set the proper memory allocations for the Unix version, but it never

I have to write extensions to R regularly. One of them was an interface to a mysql database on a different computer. The best way to do that is to have something like mysql<-function (dbname, host = "zap", user = "nobody", password = "ok") { handle <<- .RC("mysqlconnect", c(host, user, password, dbname)) } and query<-function (cmd) {

I have a very large tab-delimited file, too big to store in memory via readLines() or read.delim(). Turns out I only need a few hundred of those lines to be read in. If it were not so large, I could read the entire file in and "grep" the lines I need. For such a large file; many calls to read.delim() with incrementing "skip" and "nrows" parameters, followed by grep()