similar to: Storing loop output in matrix

Hi Everyone, I have been using the "tree" package for a while with no problems until now. When I run predict(tree, newdata), I get an error with the message "Corrupt tree" for about 50% of the trees that I generate with tree. For other trees, the predict function completes with no errors. I haven't identified a correlation between the corrupt trees and the working tree.

Dear all, I don't understand the following behaviour: Running compar.gee (in library ape ) with and without the option 'data', it give me different results Example: .... Start R .... > load("eiber.RData") > ls() [1] "gee.na" "mydata" "mytree" > library(ape) > # runnig with the option data= mydata > compar.gee(alt ~ R,

Dear All When drawing a classification tree with plot(mytree) text(mytree) the conditions are written just before the nodes branch. My question is: can one be certain that those conditions refer to the left-side branches? (The R documentation surprisingly lacks the information that I am asking for.) Thanks in advance, Paul

Hi all, I used rpart to fit a model, where the covariates in the model are categorical variables. Then I plotted the tree (mytree) and used the command "text" to add labels to the tree. In the nodes of the tree, the values of the covariates are represented with a, b or c. Is there a way to show the real value(s) of the variable in the nodes instead of a, b or c ? I found that the

Hello all, I have a problem with the way attributes are dealt with in the function xmlToList(), and I haven't been able to figure it out for days now. Say I have a document (produced by nmap) like this: > mydoc <- '<host starttime="1365204834" endtime="1365205860"><status state="up" reason="echo-reply"

Buenas tardes a todos, Quisiera crear una variable de acuerdo a ciertas condiciones. Me gustaria llegar de "datain" a "dataout". ## entrada datain <- structure(list(REF = c("999", "999", "999", "1099", "731", "731", "731", "731", "1442", "1442", "1442",

Muchas gracias Javier por tu respuesta. Si. Para obtener "dataout" se utilizan filas anteriores de acuerdo con la disponibilidad de la variable TOENDREF para cada valor de la variable REF. Por ejemplo, las filas 3 y 4 de "datain" son #REF TIMEREF TOENDREF #3 999 360 150 #4 1099 30 480 En la fila 3, el valor de TOENDREF es 150. Esto indica que hay 150

Hi all, I'm running the following code to generate 40 different jpegs based on the resulting data. I'd like the file names to be 'Cluster1.jpeg', however the code write filenames like 'Cluster 1 .jpeg'. How can I get rid of the unwanted spaces? I've looked at ?format and it doesn't seem to work - at least in this context. ################### ClusCount <- 40

I am having trouble displaying a dendrogram of evolutionary relationships (a phylogram imported from the ape package) as the vertical component of a heatmap, but keeping the hierarchical clustering of the horizontal component. The relationships of the vertical component in the generated heatmap are not that of the dendrogram, although the ordering is. In more detail, I am attempting to generate

Hi all, I've written some code to generate 4 maps per screen and write the output to a jpeg. The output is fairly quick at the start (about 5 jpegs per minute) and then slows down greatly (1-2 jpegs per minute). Is there some way to speed it up? One of my thoughts is to keep the base map static on the screen and just update the points that are being plotted on the map (with the exception

Is there way on import or add to exclude directories? (Obvious candidate being log or tmp dirs.) I''m imagining something like this: $ svn import mytree file:///usr/local/svn/newrepos/some/project --exclude /tmp --exclude /log \ I have scoured "Version Control with Subversion" without luck but maybe I don''t understand some terminology somewhere... -- Posted via

Dear all, I'm using the "ape" package in R and want to draw a phylogenetic tree with not only the tip labels but also some labels for the edges. e.g. Mark the edge AB as "m" in the tree ABC. Couldn't find a way to do that. Can someone help? Thanks, Hua

Hello, Please let me know if this is a bug or a feature. I used to be able to do the following with 2.5.5. On a remote host I have /mytree and I mirrored at my local host as a regular user doing rsync -avz --delete kent@host:/mytree /. with 2.5.6 I get mkstemp .file.aFhK3N failed: Permission denied probably because rsync2.5.6 is attempting to create a temporary file on the root directory,

Dear R-Gurus I have a data frame (from CSV file) which has its first column called Date. The Date is in the format mm/dd/yyyy. I was trying to get the weekday for these dates and I tried using wday() and day.of.week() functions and both of them gave me precisely the wrong answers. I think the issue lies in the proper formatting of dates. The class of this column is a factor class and hence I

I write a sample code like speex provide , as follows: SpeeXCodec::SpeeXCodec() { rate = 8000; speex_bits_init(&enbits); speex_bits_init(&debits); enc_state = speex_encoder_init(&speex_nb_mode); dec_state = speex_decoder_init(&speex_nb_mode); // set option for encoder speex_encoder_ctl(enc_state, SPEEX_GET_FRAME_SIZE, &frame_size); speex_encoder_ctl(enc_state,

Hi List Apologies if this isn''t the correct place for this query (I''ve tried a search of the mail archives but not had much joy). I''m running R (2.14.0) on a Mac (OSX v 10.5.8, 2.66GHz, 4GB memory) and am having a few performance issues with reading data in from a Postres database (using RPostgreSQL). My query / code are as below # -----------------------------

hi, i'm trying to figure out if there's any possibility to write a whole vector into a matrix or data.frame or something like that. i don't mean transormation. Here an example: [,1] [,2] [1,] "a" "d" [2,] "b" "e" [3,] "c" "f" where e.g. a is a<-c(0,1) vector of length 2, b a vector of length 4,... (i know that

Hi all, here is the specification for a virtio-based SCSI host (controller, HBA, you name it). The virtio SCSI host is the basis of an alternative storage stack for KVM. This stack would overcome several limitations of the current solution, virtio-blk: 1) scalability limitations: virtio-blk-over-PCI puts a strong upper limit on the number of devices that can be added to a guest. Common

Hi all, here is the specification for a virtio-based SCSI host (controller, HBA, you name it). The virtio SCSI host is the basis of an alternative storage stack for KVM. This stack would overcome several limitations of the current solution, virtio-blk: 1) scalability limitations: virtio-blk-over-PCI puts a strong upper limit on the number of devices that can be added to a guest. Common

Hola: Desde hace varias versiones no puedo utilizar la ayuda HTML de R. Cuando, por ejemplo, lanzo ?nlm me abre el navegador con ERROR The requested URL could not be retrieved While trying to retrieve the URL: http://127.0.0.1:28683/library/stats/html/nlm.html The following error was encountered: Connection to 127.0.0.1 Failed The system returned: (111) Connection refused The remote host