similar to: FW: question about the pt() calculation

Hi, I have a question about logistic regression in R. Suppose I have a small list of proteins P1, P2, P3 that predict a two-class target T, say cancer/noncancer. Lets further say I know that I can build a simple logistic regression model in R model <- glm(T ~ ., data=d.f(Y), family=binomial) (Y is the dataset of the Proteins). This works fine. T is a factored vector with levels cancer,

Dear list, A while ago I found in the web a function (sadly I can't credit the author as I don't remember where I picked it up from) whose output is a dataframe that lists for every object in the global environment its class, mode, dim & length (where applicable). It is meant to be an upgrade to the ls () function with a far more informative and detailed output and it quickly became

2009/1/2 Chris Lattner <clattner at apple.com> > On Jan 2, 2009, at 12:21 PM, Misha Brukman wrote: > Do you have a specific example of a unit test that would need these? I > really think these should stay private. > Let's take lib/Transforms/Utils/CodeExtractor.cpp . The public interface for it is in include/llvm/Transform/Utils/FunctionUtils.h, with only the high-level

Dear R users, I have a data frame with a few thousand rows and several hundred numeric columns (plus a date column). For each row (day), I want to assign +/- 1 to the highest X absolute values, 0 to the other values, and save all that in a separate data frame. I have a working solution (below), however I find it rather slow. Is there something I could do to increase the speed? (The code is

Why is RJS so dependant on programatic creation of Javascript? RHTML is a great implementation in that it puts HTML first, and Ruby second. I would have thought RJS would be the same way: a .js with ERb helpers for generating Javascript functions. RJS putting Javascript second means: - I have to learn a whole new set of commands to use Scriptaculous. - Developers have to constantly chase the

Folks, I often build up R objects starting from NULL and then repeatedly using rbind() or cbind(). This yields code like: a <- NULL for () { onerow <- craft one more row a <- rbind(a, onerow) } This works because rbind() and cbind() are forgiving when presented with a NULL arg: they act like nothing happened, and you get all.equal(x,rbind(NULL,x)) or all.equal(x,cbind(NULL,x)).

Hi all, I've come across a very strange bug with Xapian 1.0.9.0 and the Turkish query parser when trying to index a string (as posting) that looks like this: "...bir araya getiren CD'leri son teknolojiyle piyasaya...". The actual offending bit of the string is: 'leri It throws the message I have shown below. The real annoyance is that I can't seem to catch it because it

Hey list, Does anything exist that can show me which lines are explicitly tested? RCov is great, but it doesn''t really give a sense of _actual_ coverage, indeed, there is no guarantee that functions executed were in fact called as the result of a line being tested. I know nothing of the rspec internals, but would a simple list of executed lines be a relatively simple feature to add?

Hey, I''m using rspec and rails and have a spec that tests if a before_filter is executed, I also have a spec that tests if a method called by the filter is executed. It appears however that when I should_receive something, it is no longer actually called when I fire the http request. I''m not sure how, or where exactly I should manually fire the filter, either before or after the

Author: blu Repository: /hg/zfs-crypto/gate Revision: 9dfbca422b39aadbbb66a2a06662c20916e08edb Log message: 4529113 Leitch refclock driver should set precision Files: update: usr/src/cmd/xntpd/xntpd/refclock_leitch.c

Hey list, RSpec is great, I''ve been using it at work for a couple of months now. One gripe I have is that I find it hard to know exactly to what extent my code is covered by the specs. I am aware of RCov and Heckle; they''re great, but I''d like to demonstrate another perspective of coverage analysis I''ve hacked up. The perspective is that of what is mocked and

Hi, perhaps you can help me to find out, how to find the best Lambda in a LASSO-model. I have a feature selection problem with 150 proteins potentially predicting Cancer or Noncancer. With a lasso model fit.glm <- glmpath(x=as.matrix(X), y=target, family="binomial") (target is 0, 1 <- Cancer non cancer, X the proteins, numerical in expression), I get following path (PICTURE

Has anyone successfully ported or built SAMBA under Windows XP or NT? Yes, I know that Samba was created to emulate that which Windows already contains. So why (you ask) would we want to run Samba under Windows instead of MS-CIFS? We have a non-Windows RAID device (not NTFS or FAT32) which is accessed by XP and NT servers using a propritetary interface (a user-mode application, not a

Hi, Am I right in thinking that whatever is in your lib/ folder doesn''t get reloaded on each request in dev mode? Jeroen -- Posted via http://www.ruby-forum.com/. --~--~---------~--~----~------------~-------~--~----~ You received this message because you are subscribed to the Google Groups "Ruby on Rails: Talk" group. To post to this group, send email to

Hi, I noticed recently that require ''rspec'' on my machine was taking close to half a second. That''s not a huge amount of time, but it is still the single slowest part of my test suite. It boils down to Ruby 1.9''s rather slow require. I''m using 1.9.3, but I''d still like to shave off some of the require time. As an experiment, I went into

Hey, I''m using rspec and rspec_on_rails to test some RSS feed views, the problem is that the specs spew out messy warnings when they run: ignoring attempt to close channel with link opened at byte 61, line 3 closed at byte 141, line 5 attributes at open: {} text around open: "ss version=\"2.0\">\n <channel>\n <title" text around close:

Hello Everyone! Here's what I'm trying to do. I'm working on generating occurrences of precipitation based upon precipitation occurrence for a station during the previous day and two stations that have already been generated by joint probablities and 1st order Markov chains or by the same generation process. This has to be done for each remaining stations for each month. > genmat

Hey list, I''m trying to use the rcov integration that rspec provides in my Rails application. As per the documentation on the website, I''ve created the following rake task: lib/tasks/specs_with_rcov.rake: require ''spec/rake/spectask'' desc "Run all specs with rcov" Spec::Rake::SpecTask.new(''specs_with_rcov'') do |t| t.rcov = true

Patch for RubyConstants.i to add ImageList constants _______________________________________________ wxruby-users mailing list wxruby-users@rubyforge.org http://rubyforge.org/mailman/listinfo/wxruby-users

StatusBar.i -- Adds a typemap to return a wxRect structure. You''ll really want to go over this to make sure it''s correct. I don''t have a sample but it did make part of one of the bigdemo samples work a little better. If you want to put this on the back-burner until we have a chance to test it more fully I''d understand completely. One of the things