similar to: tcltk problem on Centos 5.x (64bit)

Hi, All I got trouble on installing the qvalue package. Error message: package 'tcltk' does not have a name space [cchen1 at ibibmem Yale_CB]$ R CMD INSTALL qvalue.tar.gz * installing to library '/cchome/cchen1/R/x86_64-unknown-linux-gnu-library/2.10' * installing *source* package 'qvalue' ... ** R ** data ** inst ** preparing package for lazy loading Error : package

Hello all, I'm trying to use the package qvalue. Upon trying to install it I'm running into trouble. I re-downloaded and installed the most recent CRAN distribution of R which announced itself to have tcltk included. Now when I try to load qvalue I'm getting errors that seem to indicate that I need tcltk2. I tried going to get that package and loading it but both qvalue and tcltk seem

Dear list, I have been trying to run the function "qvalue" under the package qvalue on a vector with about 20 million values. > asso_p.qvalue<-qvalue(asso_p.vector) Error: cannot allocate vector of size 156513 Kb > sessionInfo() Version 2.3.1 (2006-06-01) i686-pc-linux-gnu attached base packages: [1] "methods" "stats" "graphics"

Hi, I am trying to install qvalue, however its giving installation error -> Error : package 'tcltk' does not have a name space ERROR: lazy loading failed for package ?qvalue? * removing ?/home/sbw/R/x86_64-unknown-linux-gnu-library/2.12/qvalue? The downloaded packages are in ?/tmp/RtmpKnS1X4/downloaded_packages? Warning message: In install.packages(pkgs = pkgs, repos = repos, ...)

I am using storey's qvalue package but I keep on getting errors. Why is this? > qvalue(p, lambda=0.5)$pi0 [1] "ERROR: p-values not in valid range." Error in qvalue(p, lambda = 0.5)$pi0 : $ operator is invalid for atomic vectors -- Thanks, Jim. [[alternative HTML version deleted]]

Good Morning Everyone, I was going through my list of FTBFS packages today and I fixed all my R packages but 2: qvalue and xtable. qvalue requires ggplot2 xtable requires: lsmeans, spdep, splm, sphet, plm I am not doing any R anymore these days and in fact spot has been the one maintaining most of my R packages these days (thanks spot!!), so I am not really interested in maintaining more R

Hi, I have a huge dataset (53 million records). I have to calculate the p and q values of my data. How can I do it in R or perl? I have downloaded R (I'm completely new to R). and the package qvalue but I don't understand how can I call/use qvalue package with R. When I type library(qvalue), it gives me an error that this package doesn't exist. What should I do? Thanks! -- View this

Hi all, apologies if this has been answered before, I didn't find the answer in the archives. I am putting together a package that I would like to have optional functionality if another package is installed. In normal, non-package code, I would simply write something like if (require(qvalue)) { # use package qvalue } else { # do not use package qvalue } If I do something like that in a

In order to coerce Rails 1.2.x into supporting Unicode values for an attribute in a model, I found I had to do the following: 1) Change the underlying column type from varchar to nvarchar. 2) Prepend any quoted values going into nvarchar columns with a capital-letter-N, e. g. ''unicode'' becomes N''unicode'' In order to accomplish this, I modified

Dear colleagues, This is not strictly a R question, but I hope it is ok to ask on the list. I fed a vector of p-values from about 20 million anova tests to the package q-value and obtained this output: > qsummary(asso_p.qvalue) Call: qvalue(p = asso_p.vec) pi0: 1 Cumulative number of significant calls: <1e-04 <0.001 <0.01 <0.025 <0.05 <0.1 <1

Hello, I'm new to R, and have a problem related to spss integration with R (but is actually related to the R installation): I have windows 8, 64bit, and installed R 2.14.2, and then the R plug in for spss (spss version 21). When I tried to run somthing in spss, I got the following error messgae: Error in loadNamespace(i, c(lib.loc, .libPaths())) : there is no package called

On Tue, Mar 24, 2020 at 01:43:52PM -0500, Eric Blake wrote: > On 3/21/20 7:06 AM, Richard W.M. Jones wrote: > >Eric: > > > >Yifan Gu has posted a few patches for mingw support. My comments > >below. > > > >https://github.com/gyf304/nbdkit/commit/a37c4ca6546dfc4e96e305af97b62e5a9d6174ca > > > >* I think the SHARED_LDFLAGS idea is good. I pushed a

Hi I'm new this group and normaly samba works like a charm, but not this time. I have an fresh installed Fedora Core 9 with samba-3.2.0-1.pre3.9.fc9.i386. For som reason we have LPRng 3.8 installed, but the problem are the same with Cups. There are in fact two problems. 1. Can't see printers We have load printers = yes and printing = lprng and the [printers] [printers] comment =

Mark, there is a fdr website link via Yoav Benjamini's homepage which is: http://www.math.tau.ac.il/%7Eroee/index.htm On it you can download an S-Plus function (under the downloads link) which calculates the false discovery rate threshold alpha level using stepup, stepdown, dependence methods etc. Some changes are required to the plotting code when porting it to R. I removed the

On 3/21/20 7:06 AM, Richard W.M. Jones wrote: > Eric: > > Yifan Gu has posted a few patches for mingw support. My comments > below. > > https://github.com/gyf304/nbdkit/commit/a37c4ca6546dfc4e96e305af97b62e5a9d6174ca > > * I think the SHARED_LDFLAGS idea is good. I pushed a slightly > different take on the idea here: >

On 3/24/20 1:54 PM, Richard W.M. Jones wrote: > On Tue, Mar 24, 2020 at 01:43:52PM -0500, Eric Blake wrote: >> On 3/21/20 7:06 AM, Richard W.M. Jones wrote: >>> Eric: >>> >>> Yifan Gu has posted a few patches for mingw support. My comments >>> below. >>> >>>

Dear All, In Storey's estimator of the proportion of true nulls, the estimator depends on the tuning parameter lamda. Suppose now that an estimator of this proportion has been obtained by the qvalue package, what is the lamda that corresponds to the estimate? How to get this lamda? Thanks, -Chee [[alternative HTML version deleted]]

Eric: Yifan Gu has posted a few patches for mingw support. My comments below. https://github.com/gyf304/nbdkit/commit/a37c4ca6546dfc4e96e305af97b62e5a9d6174ca * I think the SHARED_LDFLAGS idea is good. I pushed a slightly different take on the idea here: https://github.com/libguestfs/nbdkit/commit/1d634009ab8e43592065ec469df6312400525cc8 It's slightly different from what Yifan

I think that will break the ABI backward compatibility. On Tue, Mar 24, 2020 at 15:16 Eric Blake <eblake@redhat.com> wrote: > On 3/24/20 1:54 PM, Richard W.M. Jones wrote: > > On Tue, Mar 24, 2020 at 01:43:52PM -0500, Eric Blake wrote: > >> On 3/21/20 7:06 AM, Richard W.M. Jones wrote: > >>> Eric: > >>> > >>> Yifan Gu has posted a few

Had some packages fail install so I updated to today's R-beta release. On updating packages the following packages still fail. sessionInfo follows. Mark Warning messages: 1: In install.packages(update[instlib == l, "Package"], l, contriburl = contriburl, : installation of package 'MANOR' had non-zero exit status 2: In install.packages(update[instlib == l,