similar to: Question about list function

Dear list I've a generic question about how to tune an SVM I'm trying to classify with caret package some population data from a case-control study . In each column of my matrix there are the SNP genotypes , in each row there are the individuals. I correctly splitted my total dataset in training(132 individuals) and test (50 individuals) (respecting the total observed genotypic

Dear list I'd like to have your opinion about my case study. I'm analizing a dataset of 9 experiments and 15 variables with the aim to highlight the variables that can majorly explain the variance between the experiments. This is an example with only 3 rows and 5 variables var1 var2 var3 var4 var5 sample5 0,067 0,005 0,008 0,100 0,005 sample6 0,069 0,001

Dear user is the first time that I use wine. I'm trying to install with wine 1.31 a technical software for analyzing some biological data. Starting from a shell I retrieve always the same error Please could someone give to me some suggestion about what this error mean? thank you very much Guido fixme:sfc:SFC_3 0 fixme:advapi:SaferCloseLevel ((nil)) stub err:ole:create_server class

Hi R-experts I have many text files to read and combined them into one into R that are output from other programs. My textfile have unbalanced number of rows for example: ;this is example ; r help Var1 Var2 Var3 Var4 Var5 0 0.05 0.01 12 1 0.04 0.06 18 A 2 0.05 0.08 14 3 0.01 0.06

Dear All Sorry for this simple question, I could not solve it by spending days. My data looks like this: # data set.seed(1234) clvar <- c( rep(1, 10), rep(2, 10), rep(3, 10), rep(4, 10)) # I have 100 level for this factor var; yvar <- rnorm(40, 10,6); var1 <- rnorm(40, 10,4); var2 <- rnorm(40, 10,4); var3 <- rnorm(40, 5, 2); var4 <- rnorm(40, 10, 3); var5 <- rnorm(40, 15,

Hi, I am using R 1.9.1 on on i686 PC with SuSE Linux 9.0. I have a data.frame, e.g.: > myData <- data.frame( var1 = c( 1:4 ), var2 = c (5:8 ) ) If I add a new column by > myData$var3 <- myData[ , "var1" ] + myData[ , "var2" ] everything is fine, but if I omit the commas: > myData$var4 <- myData[ "var1" ] + myData[ "var2" ] the name

Let say, I have a matrix with 8 rows and 6 columns:  >  df1  <- matrix(NA, 8, 4)  > df1       [,1] [,2] [,3] [,4]  [1,]   NA   NA   NA   NA  [2,]   NA   NA   NA   NA  [3,]   NA   NA   NA   NA  [4,]   NA   NA   NA   NA  [5,]   NA   NA   NA   NA  [6,]   NA   NA   NA   NA  [7,]   NA   NA   NA   NA  [8,]   NA   NA   NA   NA  Now I want to get **all possible** ways to fetch 6 cells at a

Dear all, I am trying (!!!) to generate pdfs that have 8 plots on one page: df = data.frame( day = c(1,2,3,4), var1 = c(1,2,3,4), var2 = c(100,200,300,4000), var3 = c(10,20,300,40000), var4 = c(100000,20000,30000,4000), var5 = c(10,20,30,40), var6 = c(0.001,0.002,0.003,0.004), var7 = c(123,223,123,412), var8 = c(213,123,234,435), all = as.factor(c(1,1,1,1)))

Hi R users, I have a question about plotting. The following two datasets are an example. What I have in mind is like the attached figure, but just have two rows, top row is for DF1, bottom row is for DF2. The top and bottom rows, have x-axis as var1, var2, var3, etc, while the y-axis represents A. For each row, only the leftmost panel has y-axis ticks and label. For the two rows, only the bottom

Dear list I'm testing a predictor and I produced nice performance plots with ROCR package utilizing the 3 standard command pred <- prediction(predictions, labels) perf <- performance(pred, measure = "tpr", x.measure = "fpr") plot(perf, col=rainbow(10)) The pred object and the perfo object are S4 with the following slots An object of class "performance"

Hi, Suppose I have a data.frame like this Lines <- "var1 var2 var3 var4 var5 var6 0 2 1 2 0 0 2 3 7 6 0 1 1.5 4 9 9 6 0 1.0 6 10 22 3 3 " DF <- read.table(textConnection(Lines), skip=1) names(DF) <- scan(textConnection(Lines), what = "", nlines = 1) How do I find the

Dear all, I have a dataset that looks like this: x <- read.table(textConnection("col1 col2 3 1 2 2 4 7 8 6 5 10"), header=TRUE) I want to rewrite it as below: var1 var2 var3 var4 var5 var6 var7 var8 var9 var10 1 0 1 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 0 0

Dear everyone, I have looked all over the internet but I cannot find a way to solve my problem. In my data I want to sum a couple of variables. Some of these variables have NA values, and when I add them together, the result is NA dat <- data.frame( id = gl(5,1), var1 = rnorm(5, 10), var2 = rnorm(5, 7), var3 = rnorm(5, 6), var4 = rnorm(5, 3), var5 = rnorm(5, 8) ) dat[3,3] <- NA dat[4,5]

Hi, I am trying to merge data similar to the example data below > dat0 id var1 var2 var3 2 1 0 1 3 1 0 1 4 0 1 1 5 0 1 1 > dat1 id var4 var5 var6 2 1 0 1 3 1 0 1 6 0 1 1 7 0 1 1 > dat2 id

Dear all, I have a dataset that looks like id var1 var2 var4 var7 var8 1 0.0 0.1 0.3 0.9 0.0 2 0.4 0.6 0.0 0.0 0.2 3 0.0 0.0 0.0 0.8 0.7 Some columns are missed, for example, here the fourth (var3), sixth(var5) and seventh (var6) columns. I want to first determine which columns are missed in a huge dataset and then add the missed

Dear All, I am planning to run a Monte-Carlo experiment which involves to do roughly 100.000 times the following 1- Generating a sample of, say, 50.000 numbers from an ARMA or GARCH 2- Doing some regressions on the series 3- On each regression storing one special value from the results into a sequence that will be analyzed later. The experiment is calculation-intensive, and I suspect some

I have a dataframe called "data" with 5 records (in rows) each of which has been scored on each of many variables (in columns). Five of the variables are named var1, var2, var3, var4, var5 using headers. The other variables are named using other conventions. I can create a new variable called var6 with the value 15 for each record with this code: > var6=var1+var2+var3+var4+var5

-- Eredeti üzenet -- Feladó: Dévaványai Agamemnón &lt;devavanyai@citromail.hu&gt;Címzett: r-hel@r-project.org, r-hel@r-project.orgElküldve: 2010. július 29. 16:29Tárgy : duplicates Sorry! I try it again Dear R Users! I have a dataframe with duplicatecases. Var1 duplicated by var2. var1 var2 var3 var4 var5 1 4 500 1 2 1 3 200 2 5 1

Hello, I have many hundred variables in my longitudinal dataset and lots of missings. In order to plot data I need to remove missings. If I do > data <- na.omit(data) that will reduce my dataset to 2% of its original size ;) So I only need to listwise delete missings on 3 variables (the ones I am plotting). data$variable1 <-na.omit(data$variable1) does not work. Thank you

Let's say I have a program that returns variables whose names may be any string within the vector NAMES=c("varA","varB","varC","varD","varE","varF"..."varZ"), but I do not ever know which ones have actually been created. So in one example output, "varA", "varC", and "varD" could exist, but