similar to: Catmap package and forest plots

This ought to work: resultdt <- lapply(PGWide[, 240:389], function(x, ...) try(tdt(x, ...))) You can then check the class of each component to see which one failed. Andy From: Farrel Buchinsky > > "Berton Gunter" <gunter.berton at gene.com> wrote in message > news:008601c67097$de1b46e0$5bc4fea9 at gne.windows.gene.com... > > ?try > > > > as in

I am about one step away from heaven on earth. I think only one step! I am using dgc.genetics to run a TDT test on thousands of genetic loci. I have learnt (through the help of others on this mailing list) to send the complex output to useful data frames which in turn allow me to look at the big picture and screen the thousands of loci. Resultdt<-lapply(PGWide[,240:290], tdt) the above

I am using dgc.genetics to perform TDT analysis on SNP data from a cohort of trios. I now have a file with about 6008 variables. The first few variables related to the pedigree data such as the pedigree ID the person ID etc. Thereafter each variable is a specific locus or marker. The variables are named by a pattern such as "Genotype.nnnnn" with nnnnn corresponding to a number which

I am involved in a study where, as in most of life, men demonstrate themselves to be recalcitrant. So while we have many probands and most of their mothers we only have about 50% of the trios being complete. I have been running tdt and trio.types. It appears as if it is ignoring the duos. Sometimes a duo can be informative. For instance Father ..missing Mother 1/2 Proband 1/1 This duo shows that

Hello, I have been using Xen on a Debian Lenny server for quite some time. I decided to build a new Dom0 using identical hardware, but newest version of Xen from repositories with Debian Squeeze. I attempting to create a new DomU on the new host which is similar to an existing DomU running on the older Lenny host. The DomU is a three NIC firewall. Two of the NICs are virtualized. One NIC is a

Last Friday, Gregory Chaitin (http://www.umcs.maine.edu/~chaitin/lm.html) mentioned that there can be no proof that a given code is the shortest for a problem, even within a language. Still, the script below, a replacement of the "TDT", one of the most frequently used tests in genetics (http://mustat.rockefeller.edu under "downloads") may get close. It contains a few

Does anyone know if the sib TDT has been implemented in R 1. Spielman, R.S., and Ewens, W.J. (1998) A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test. Am J Hum Genet 62, 450-458 -- Farrel Buchinsky, MD Pediatric Otolaryngologist Allegheny General Hospital Pittsburgh, PA

Hi Mr Tierney, I have noticed an error message from R 1.12.x's CMD check for a while (apparently prof Ripley completely rewrote CMD check in R 1.12+) e.g.: http://bioconductor.org/checkResults/2.7/bioc-LATEST/snpMatrix/lamb2-checksrc.html ---------------- * checking R code for possible problems ... NOTE Warning: non-unique value when setting 'row.names': ?new? Error in

Kevin Stange, It can be either kernel or update the NIC driver or firmware of the NIC card. Hope that helps! Xlord -----Original Message----- From: CentOS-virt [mailto:centos-virt-bounces at centos.org] On Behalf Of Kevin Stange Sent: Tuesday, January 24, 2017 1:04 AM To: centos-virt at centos.org Subject: [CentOS-virt] NIC Stability Problems Under Xen 4.4 / CentOS 6 / Linux 3.18 I have three

On 01/23/2017 11:04 AM, Kevin Stange wrote: > I have three different types of CentOS 6 Xen 4.4 based hypervisors (by > hardware) that are experiencing stability issues which I haven't been > able to track down. All three types seem to be having issues with NIC > and/or PCIe. In most cases, the issues are unrecoverable and require a > hard boot to resolve. All have Intel NICs.

Hi, I am using R for microarray data anlaysis. When I normalize my data, it converts all my data in to log base 2 values. how can I convert back to log base 10..is there any function in R which I can use or how can I take anti log. or is there any function in R for antilog. Please let me know,..if anyone knows.. Thank you so much, Saurin ===== Saurin's WebWorld:

Hi~ helpers. I was surprised by R data type. I use to data type like table. I don't know R allow several data type such as list, number, matrix in the same matrix. I want to use plsr in pls package to anlaysis data. So, I read R help and example of plsr. that example show me that data as yarn has three colname as NIR, density and train. the NIR was 268(No. of col) X 71(No. of row)

Hello all, I'm trying to do a nested linear model with a dataset that incorporates an observation for each of several classes within each of several plots. I have 219 plots, and 17 classes within each plot. data.frame has columns "plot","class","age","dep.var" With lm(dep.var~class*age), The summary(lm) function returns t-test and F-test values

Hello, Is it possible to include information about phylogenetic relatedness among species (when species are replicates for each study within a meta-analysis) in a meta-anlaysis in the metafor package? Alternatively, I wonder if the method f Lajeunesse 2009 American Naturalist has been adopted in R in any fashion? Thanks, Scott Chamberlain [[alternative HTML version deleted]]

I have R version 2.9.1 on my computer and the anlaysis is not working because I need to update to R version 2.12.0 the latest release. The person incharge of IT tried to download R version 2.12.0 but .exe file referenced in install isn't there - What might we be doing wrong? We have downloaded as tar.gz, uncompress then look for .exe file but not present. Many thanks, Morris

Dear all &nbsp; I wish to carry out sigma- and beta-convergence analysis in respect of panel data [wherein current value of one of the variables needs be regressed upon suitably transformed lagged values of another variable(s)]. I am quite new to the R-language and am not very much aware of the availbaility of suitable package(s)/ code in the language. Can any one help me in letting me know of

I have three different types of CentOS 6 Xen 4.4 based hypervisors (by hardware) that are experiencing stability issues which I haven't been able to track down. All three types seem to be having issues with NIC and/or PCIe. In most cases, the issues are unrecoverable and require a hard boot to resolve. All have Intel NICs. Often the systems will remain stable for days or weeks, then

On 02/21/2017 11:47 AM, Johnny Hughes wrote: > On 01/23/2017 11:04 AM, Kevin Stange wrote: >> I have three different types of CentOS 6 Xen 4.4 based hypervisors (by >> hardware) that are experiencing stability issues which I haven't been >> able to track down. All three types seem to be having issues with NIC >> and/or PCIe. In most cases, the issues are

How does one create a vector whose contents is the list of variables in a dataframe pertaining to a particular pattern? This is so simple but I cannot find a straightforward answer. I want to be able to pass the contents of that list to a "for" loop. So let us assume that one has a dataframe whose name is Data. And let us assume one had the height of a group of people measured at

On Tue, Jan 24, 2017 at 09:29:39PM +0800, -=X.L.O.R.D=- wrote: > Kevin Stange, > It can be either kernel or update the NIC driver or firmware of the NIC > card. Hope that helps! > > Xlord > -----Original Message----- > From: CentOS-virt [mailto:centos-virt-bounces at centos.org] On Behalf Of Kevin > Stange > Sent: Tuesday, January 24, 2017 1:04 AM > To: centos-virt