similar to: cannot find system Renviron Fatal error: unable to open the base package

Hi, I have a simple R script for printing arguments cat > printargs.R << EOF args = commandArgs() print(args) q() EOF To run this script, first I set PATH to ~/src/R-2.6.2 and execute > R --no-save < printargs.R I want to run this script with different R versions by defining an .Renviron file in the same directory as printargs.R cat >

ligges@statistik.uni-dortmund.de wrote: > > Was on R-help: > > Subject: Re: [R] .Renviron and Renviron.site (on Windows XP) > Date: Thu, 11 Sep 2002 > From: "James Rogers" <jrogers@cantatapharm.com> > > At least on the windows version of R the file > ...../etc/Renviron.site > won't be interpreted as mentioned in, e.g., ?.Renviron. >

Hi, I am interested in customizing the installation of R. I have gone through the ?R Installation and Administration? manual. But some of the stuff is not clear to me and I would like to get clarifications on the following points (for a Windows installation with R_HOME=C:\\R\\R-2.9.1 ) : 1. I understand that I need to create a file, .Renviron with the following path : R_HOME\\etc\\.Renviron where

Dear R-devel: i have noticed a little wrinkle in R packaging for RPM systems and have communicated with the package maintainer at RedHat Tom Callaway (see far below). Here is the question: Where does R Core Team want packagers to fiddle around with R library paths? Currently, the RPM Spec file used for EPEL's R (For Fedora/Redhat/Centos,etc) adds a line in R_HOME/etc/Renviron like this:

Hi everyone, Two minor points about ?.Renviron. 1) If R_ENVIRON is not set then R defaults to `${R_HOME}/etc/Renviron', not `${R_HOME}/etc/Renviron.site' as stated. 2) In the details, there is a missing "way" in "`value' is processed in a similar to a Unix shell." Cheers, Jonathan. --please do not edit the information below-- Version: platform =

I am trying to build R on a Centos server without admin privileges (or support), so I can call R functions from NetLogo models (via the NetLogo R extension or possibly Rserve), but I'm getting stuck near the end of make. Any suggestions? Here's the setup... $ R_SHELL=/bin/sh $ R_HOME=~/R-devel $ cd $R_HOME; ./configure; make returns ... begin installing recommended package MASS

Dear all, When installing the usual packages that I use, after installing R 3.0.1, I noticed that the installation of some packages that query R about its configuration did not succeed. The problem is exemplified by: berwin at bossiaea:~$ R-3.0.1 CMD config CC /opt/R/R-3.0.1/lib/R/bin/config: 222: .: Can't open /opt/R/R-3.0.1/lib/R/etc/Renviron Prior to R 3.0.1 such commands worked fine:

Hi All, As you may know I am trying connect R with java by RJava, now I run the examples, I got this error rShowMessage "Fatal error: unable to open the base package I am using 64bits windows 7 and eclipse. Any suggestions? Many thanks Ying [[alternative HTML version deleted]]

On Debian/Ubuntu, system wide environment variables and options are set in respectively /etc/R/Renviron.site and /etc/R/Rprofile.site. These files are automatically created when r-base is installed, and do not get overwritten during an upgrade. On Fedora, there is no /etc/R directory. What is the recommended place to define system wide environment variables and options on a Fedora system?

First I tried 'setenv R_SHELL /usr/local/bin/bash', as bash is the weapon of choice for the faculty wishing to use R, then ran ./configure as before. The ./configure output line using as R_SHELL for scripts ... /usr/local/bin/bash would seem to indicate that the R_SHELL environment variable was recognized and acknowledged. However, I got the same build error: gnumake[2]: Entering

Dear Members, I have developed a program which calls clustering libraries from R. Everything works fine on my laptop. But when I installed the program on another computer, the program gives me the error message: Cannot find JRI native library! Please make sure that the JRI native library is in a directory listed in java.library.path. java.lang.UnsatisfiedLinkError: C:\eclipse\lib\rJava\jri.dll:

On 7/28/2015 1:32 PM, Uwe Ligges wrote: > Just add the line > > R_LIBS_SITE=F:/R/library > > to the file R_HOME/etc/x64/Renviron.site Thanks, Uwe I have no way to test this and our IT people who do the installation know nothing of R, so follow-up questions: * There is no R_HOME/etc/x64/Renviron.site file, but there is a R_HOME/etc/Rprofile.site I can modify and ask them to

Hello, Could someone please tell me why the following doesn't work: I have a file C:\Program Files\R\rw1051\etc\Renviron.site, which contains the line: R_LIBS= "C:/Jim/LocalR-Libraries/FromCran"; "C:/Jim/LocalR-Libraries/Cantata" >From the documentation, I gather that I have put this file in the default location, but to be safe I also explicitly set the R_ENVIRON

I am having difficulty coming to grips with Appendix B.2 of the otherwise very useful "An Introduction to R" and the related help file for Startup. I am running RGui 1.6.0 on a Windows 2000 machine from the default installation. How the concepts discussed in B.2 and the Startup help file relate to what I see on my machine is something of a mystery. I quote from the Startup file:

ISSUE: It looks like Rgui.exe never processes ~/.Renviron - only ./.Renviron. REPRODUCIBLE EXAMPLE: On Windows, create the following ~/.Renviron and ~/.Rprofile files: C:\Users\alice> Rscript -e "cat('FOO=123\n', file='~/.Renviron')" C:\Users\alice> Rscript -e "cat('print(Sys.getenv(\'FOO\'))', file='~/.Rprofile')" and launch

Just add the line R_LIBS_SITE=F:/R/library to the file R_HOME/etc/x64/Renviron.site Best, Uwe Ligges On 28.07.2015 15:53, Michael Friendly wrote: > I'm the faculty member in my department who advises our IT staff on the > details of installing R for > students and faculty on our Windows 7 lab network. We are about to > upgrade from R 3.1.1 to > R 3.2.1, and once that is

Dear R-help, I am trying to use a package (not from CRAN) which includes two shared library (.so) files. The maintainer suggests inserting two lines in /usr/bin/R, LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:path-to-package/lib export LD_LIBRARY_PATH This works, but I felt more comfortable putting the first line in .Renviron or $R_HOME/etc/Renviron.site. However this doesn't seem to work, and I

Dear All, I would like to reset default R_HOME PATH for R.3.1.3. I installed R-devel in /usr/local/R-devel but I can't install many packages as tcltk. I uninstalled R-devel and I would reuse R.3.1.3 but the PATH is remaining to /usr/local/R-devel. I touch ~.Renviron file with R_HOME=/usr/lib/R/bin/ RSTUDIO_R_HOME=/usr/lib/R/bin/ R_LIBS=~/R/x86_64-pc-linux-gnu-library/3.1

Hi there, Moving this request for info over from an R-HPC-SIG list thread as the issue is less HPC than something that has bitten me as a result of trying to install HPC (read CUDA) R packages. Background to this is that I have both a Ubuntu host for a Tesla card that some researchers are looking to do CUDA-related R computation on, and a prototype, RHEL-based, cluster that is being used to

Hi I am receiving this error: java.lang.UnsatisfiedLinkError: C:\Program Files\R\R-2.8.0\library\rJava\jri\jri.dll: Can't find dependent libraries Have done following stuff -R_HOME is set - "C:\Program Files\R\R-2.8.0\bin\"; -also using -Djava.library.path="C:\Program Files\R\R-2.8.0\library\rJava\jri" -Path is set - "C:\Program