similar to: Sweave: option keep.source=TRUE and package cacheSweave

This could well be a package-specific issue, and so perhaps not for R-devel. The author of the relevant package is CC'd in any event. I'm seeing some odd behavior from Sweave with keep.source=TRUE when using driver=cacheSweaveDriver from the cacheSweave package. It would seem that code chunks with keep.source=TRUE aren't being parsed correctly; the corresponding Schunk starts at

Hello all, I would like to ask several questions regarding cacheSweave: 1) Is there a way to set "cache=true" globally? (I tried it using \SweaveOpts but it didn't seem to work) 2) Is there a way to "flush" specific cache once it is created? (other then erasing the entire cache directory)? Changing the code in the code chunk seems to do it, but I am not sure to what

Dear All, I have been using Sweave (mainly via the Sweave.sh script) and really like it. I am working a paper (using Sweave, of course) which includes several time-consuming computations, and it gets tedious to re-compile the whoel thing every time I made changes. Then I discover the "cacheSweave" package, which seems the right solution to my problem. I only have on problem. Here is

Hi all, I use the excellent packages rjags and cacheSweave, and unfortunately seem to have found an incompatibility between them. Below are a minimal .Rnw file and corresponding JAGS model file which illustrate the problem: *** JAGS model file; name=j.bug *** model { mu ~ dnorm(0,1.0E-5) sigma ~ dunif(0,100) for(i in 1:length(y)) { y[i] ~ dnorm(mu,sigma) } } *** *** .Rnw

Hi Tomas, Many thanks for your answer. Here is a copy of a fresh session under RStudio, and after a copy under Rgui. Strangely enough the result of memory.limit() is not the same. Without your question I would not have looked to RGui, being used to work with RStudio. The value under RGui sounds to correspond to the total RAM of the computer. It makes me noticing that the value is in MB.

Dear list, I?m using R embedded in another program (coded in tcl/tk) under Windows Vista. In this context I don?t launch Rgui.exe but rather Rtem.exe. Now I have a problem finding libraries not specifically installed as administrator (and which are not in the path ?program files? but in Contacts\Documents of the current user). To be precise, the user launching my tcl/tk program can?t find

Full_Name: Zivan Karaman Version: 2.7.2 OS: Windows XP Submission from: (NULL) (195.6.68.214) I'm puzzled by the readRegistry function. Shouldn't the "hive" argument be something like c("HLM", "HCR", "HCU", "HU", "HCC", "HPD") rather than c("HLM", "HCR", "HCU", "HU",

Dear list, I wish to use a specific driver to process an sweave document in the inst/doc directory of a package. Specifically, I would like to use either cacheSweave or pgfSweave to speed up the creation of the vignette which requires lengthy computations. The same request would also apply to the highlight driver, to provide syntax highlighting of R chunks. In "writing R extensions" I

Dear list, I wish to use a specific driver to process an sweave document in the inst/doc directory of a package. Specifically, I would like to use either cacheSweave or pgfSweave to speed up the creation of the vignette which requires lengthy computations. The same request would also apply to the highlight driver, to provide syntax highlighting of R chunks. In "writing R extensions" I

Dear guRus, I'd like to learn how to make a function recognize the name of an object/vector given as argument If I have : testFun <- function(x,y) plot(x,y, main=paste("plot of",names(x),"and",names(y)) ) # this just a simple example ... a1 <- 5:8 b1 <- 9:6 testFun(a1,b1) # Returns the plot, but not the names of the objects/vectors given as arguments, # but

Hi there I have a problem with using Sweave in combination with the option driver = cacheSweave. Whichever code I try to run - when it comes to converting the tex file into pdf it comes up with the same errors (\csname \endcsname errors). Does anybody have an idea what it going wrong? > Sweave("pgfSweave-example.Rnw",driver = cacheSweaveDriver) Writing to file

Dear all, I have installed the latest version of R 2.12.0 available on CRAN (http://cran.r-project.org). When I try to load the recommended package lattice: > library(lattice) Error: package 'lattice' is not installed for 'arch=i386' I am running Rgui using C:\R\R-2.12.0\bin\i386\Rgui.exe --vanilla > sessionInfo() R version 2.12.0 (2010-10-15) Platform:

Hello, I 'd like to use some functions in myLib. So I do: library(myLib) Then I get this message: Error: package 'myLib' is not installed for 'arch=i386' > sessionInfo() R version 2.13.2 (2011-09-30) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=French_France.1252 LC_CTYPE=French_France.1252 LC_MONETARY=French_France.1252 LC_NUMERIC=C

Dear list, I have encountered a special case for searching a linear regression where I'm not satisfied with the results obtained using the traditional least squares method (sometimes called OLS) for estimating/optimizing the residues to the regression line (see code below). Basically, a group of my x-y data are a bit off the diagonal line (in my case the diagonal represents the ideal or

Dear list, ?require says : "... |require| is designed for use inside other functions; it returns |FALSE| and gives a warning (rather than an error as |library()| does by default) if the package does not exist ..." However when I run the following code I don't get any TRUE / FALSE statements (but the warning only). Since I want to test from inside of a function if a given package

I met today a computer crash and our maintenance officer had to reinstall some components of the OS (MS Windows XP Pro) as well as the Internet browser (among other things). Now, I cannot install packages from a distant repository: > utils:::menuInstallPkgs() Error in .readRDS(pfile) : unknown input format > traceback() 5: .readRDS(pfile) 4: .packages(all.available = TRUE) 3:

Dear all, I am trying to aggregate a table (divided in two lists here), but get a memory error. Here is the code I'm running : sessionInfo() print(paste("memory.limit() ", memory.limit())) print(paste("memory.size() ", memory.size())) print(paste("memory.size(TRUE) ", memory.size(TRUE))) print(paste("size listX ", object.size(listX)))

Dear all, I have a problem with an Rd file containing French accentuated characters. I have uploaded the file at http://filex.cirad.fr/get?k=cjW7lImMaNC6Ci2vX0H I have declared Encoding: latin1 in the package DESCRIPTION file and I have added \encoding{latin1} in the header of the Rd file. When I compile the package manual, I have LaTeX errors: ! Package inputenc Error: Unicode char \u8:?F

Dear list members, If I install with R-devel r74500 on Windows (sessionInfo below) the attached 'bugdemo' package with the single function foo <- function() { ? named <- c("bar"=TRUE) ? print(named) ? return(named) } then run > bugdemo::foo() [1] TRUE [1] TRUE The "bar" name is lost. It is not lost when I define foo in the R session instead of using

Dear All, I am trying to convert to POSIXct after pasting a date and a time in character format with strptime. It is probably obvious but I don't understand why I get an error message after bsamp$spltime<-strptime(test,format="%d-%B-%y %H:%M") whereas I can get what I want if I do it in 2 steps and rbinding ? Thanks and best regards, Jean-Louis This is the R console output