similar to: Trouble installing gsl wrapper

Dear R users: I have a problem when installing the R package *gsl*. The procedure is as follows: (1) Since it needs a GSL vesion >=1.12, and the GSL library on the serve I use is too old, I download GSL 1.15 and install it in my own account, such as $HOME/local/gsl. Because I do not have root access, so it cannot be installed in standard folder. (2) Then I download the source code of R

I have just upgraded to the latest R (3.3.2) and thought I should update my library of contributed packages. Ran into problems with "copula". Got the error: > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared object '/home/rolf/Rlib/gsl/libs/gsl.so': > libgsl.so.0: cannot open shared object file: No such file or directory So after a bit

On 01/11/16 21:08, Kirill M?ller wrote: > Did you reinstall the gsl package [1]? Apparently not. I did a complete update.packages() which reinstalled a great number of packages (I have a great number in my personal library). There were complaints about 4 packages, one of which was "copula", but "gsl" was not one of them. I would have *thought* that if "gsl"

Hi, I am writing a function in C that is meant to be called by R. In the C function, I used a gsl function gsl_stats_mean. The code is as simple as below void gsl(double *m, int *dim){ int r, c; r = dim[0]; c = dim[1]; double mean = gsl_stats_mean(&m[0], 1, r); Rprintf("mean = %f\n", mean); } The C code is succesfully compiled and the output is as follows. $ R CMD SHLIB

Following the recommendation of Prof. Ripley, I have created the Makevars file with the line: PKG_LIBS="-L/usr/lib/libm -lm -L/usr/local/lib/libgsl -lgsl -L/usr/local/lib /libgslcblas -lgslcblas" in the working directory. Now I have the code file Example3.c which computes the Bessel function value (the example is taken from the GSL reference book). I am running: R CMD SHLIB Example3.c

hello I maintain the gsl R package, and many users have recently reported that the package does not install from source under macosx 10.9 ("mavericks"). Users typically install the gnu GSL library and are able to compile and run a small "hello world" program which executes some of the Bessel functionality of the library; but under mavericks the configure script (which uses

Dear R-list people, I asked a similar question a few hours before. I will try to be more specific. We like to add the GSL library to the file SHLIB in order to make it possible to run the C code using GSL functions from R. We read that the path to the libgsl.a should be added to the line shlib_libadd=' ' in the file SHLIB but it does not work on our system. Dyn.load fails with error

Hi all, I am new to R and am writing after having contacted Robin Hankin, who maintains the R gsl wrapper. I am trying to use an AFNI (neuroimaging analysis) program that depends on the R gsl package. When I try to use the script I wrote, I get an error that led me to suspect the gsl package was a culprit. When I do library("gsl") within R, I get: Error in dyn.load(file, DLLpath

The error message mentions (perhaps not very clearly) that the shared library installed with the gsl R package could not be loaded. Chances are that the gsl package (and as a consequence the copula package, too) didn't work before you upgraded. This can happen e.g. if the dependent system library (libgsl-dev?) is upgraded. update.packages() doesn't try to load any packages, which

I'm attempting to install the gsl package using the following command: install.packages("c:/users/mike/documents/R/win-library/gsl_1.9-9.tar.gz",repos=NULL,type="source") My attempt is failing. Please help. The message supplied is: Installing package(s) into ‘C:/Users/Mike/Documents/R/win-library/2.15’ (as ‘lib’ is unspecified) * installing *source* package

I tried to dynamically load a c++ function. Everything seems to be OK when dyn.load() is executed but then I get this error Error in .C("integral", sumInMean, sumInVar, boundError, numberSampleClasses, : C/Fortran function name not in load table The code of the function is something like this: #include <cmath> extern "C" { #include

I am trying to install the gls package (a wrapper for GNU scientific library special functions) package under Ubuntu 5.10. I have gls-bin (the debian GNU Scientific Library binary package). When I try to install the R package, I receive the following. > install.packages("gsl",dependencies=T) Warning in install.packages("gsl", dependencies = T) : argument

I have been working on an R package that calls C code using .C(). I recently started including some functions from the GNU Scientific Library in my code. The code runs fine on my machine when not wrapped in the package. But I get the following error from "R CMD check" * checking whether the package can be loaded ... ERROR Loading required package: splancs Loading required package: sp

Dear Team, Maybe somebody already tried to install mpfr and gsl packages for R on SLES. Exactly I try to install Rmpfr_0.6-1.tar.gz and gsl_1.9-10.3.tar.gz on SLES11 SP4. These are the available packages from official SLES SDK media: rtest:/home/ruser # rpm -qa | grep -i gsl gsl-devel-1.11-1.30 gsl-1.11-1.30 rtest:/home/ruser # As I understand gsl is from 1.11 till 1.30 level.

Hello everyone, I've tried to install the R gsl package but without success because R claims there needs to be a gsl library version >= 1.12 installed on the system. Actually gsl library version 1.12 is installed locally in my home directory and I set PATH and LD_LIBRARY_PATH in .bash_profile to point to corresponding bin and lib directory. gsl-config is accessible from everywhere in the

I hope that someone on this list can help me with this issue. I have searched through all of the documentation and mail archives for a solution, but have been unable to find an answer that addresses my particular problem directly. Suppose I am writing some C code that I want to access from R through the .C function. As part of the C function, I want to include an external C library, such as the

I have written an R package which contains C source code (in the directory pkg/src). Only a subset of the functions in the pkg/R directory contain a .C() call to the functions in the pkg/src directory. The rest of the package will still work and be useful without the functions containing a .C() call. To compile the code in pkg/src requires the GSL library. This is detailed in the

Hi I want to install the R package gsl, which is a wrapper to the library GSL. Installation fails as it seems that I did not install the right GSL library: * Installing *source* package 'gsl' ... checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of

Full_Name: Levi Waldron Version: 2.5.1 OS: Ubuntu Gutsy Submission from: (NULL) (206.248.157.88) I installed libgsl0-dev then tried to install the gsl cran package, unsuccessfully (see output below). As a workaround I created a symbolic link to /usr/bin/gcc-4.2, ie: sudo ln -s /usr/bin/gcc-4.1 /usr/bin/gcc-4.2 The correct behavior of the gsl package should be to use the executable

Newbie here (to R) and running Linux... > install.packages("gsl","~/R") ... trying URL 'http://cran.wustl.edu/src/contrib/gsl_1.8-4.tar.gz' Content type 'application/x-tar' length 57051 bytes opened URL ================================================== downloaded 55Kb * Installing *source* package 'gsl' ... checking for gcc... gcc checking for C