similar to: Randomly shuffle an array 1000 times

Dear List, I have a table i have read into R: Name Yes/No John 0 Frank 1 Ann 0 James 1 Alex 1 etc - 800 different times. What i want to do is shuffle yes/no and randomly re-assign them to the name. I have used sample() and permute(), however there is no way to do this 1000 times. Furthermore, i want to copy the data into a excel spreadsheet in the same order as the data was input so i can

Hi, I'me trying to write a function that will shuffle a vector. At the moment I'm baically making a vector of randomized indices and then making a new vector from the original one using these random indices. However, is there an alternative (more elegant) method to do this? I tried help.search('shuffle') but it does'nt return anything relevant. Thanks,

Hi, I'm looking for an efficient code that will enable me to reshuffle data (phenotype) for certain number of individuals and creating a loop that will randomly simulate it for 10000 times *(permutation)*. I also need to find how I keep the information (p value for each SNP) gathered for all the 10000 iterations. My data set looks like this (n=500): Individual # Phenotype SNP1 SNP2

Dear R users: Recently, I tried to write a program to calculate cross-validated predicted value. My sources are as follows. However, the R reported an error. Could you please check the sources? Thanks. set.seed(100) x<-rnorm(100) y<-sample(rep(0:1,50),replace=T) dat<-data.frame(x,y) library(rms) fito<-lrm(y~x) preo<-predict(fito) pre<-matrix(NA,nrow=100,ncol=200) for (i in

I all, is there a way with R to perform an exact permutation test to replace the wilcoxon test to compare paired series and/or to perform pairwise multiple comparisons for related series after a Friedman test ? Thanks Gilles

Hello, I'm at the very beginning of the learning process of this language. Sorry in advance for the (possible but plausible) stupidity of my question. I would like to find a way to permute the DIMENSIONS of an array. Something that sounds like the function "permute()" in matlab. Given an array C of dimensions c x d x T , for instance, the command permute(C, [2 1 3]) would provide

Hello all, I have the following function call to create a matrix of POP_SIZE rows and fill it with bit strings of size LEN: pop=create_pop_2(POP_SIZE, LEN) I have 3 questions: (1) If I did keep_pop[1:POP_SIZE] == pop[1:POP_SIZE] to keep a copy of the original data structure before manipulating 'pop' potentially, would this make a deep copy or just shallow? Ie

I'm using the survey api. I am taking 1000 samples of size of 100 and replacing 20 of those values with missing values. Im trying to use sequential hot deck imputation, and thus I am trying to figure out how to replace missing values with the value before it. Other things I have to keep in mind is if there are two missing values side by side, how do I replace both those values with the

R version 2.13.1 OS X (or Windows) Colleagues, I received a number of files with a .xls extension. These files open in XL and, by all appearances, are XL files. However, it appears to me that the files are actually XML: > readLines(dir()[16])[1:10] [1] "<?xml version=\"1.0\"?>" [2] "<Workbook

Hello, I have what I suspect might be an easy problem but I am new to R and stumped. I have a data set that looks something like this b<-c(2,3,4,5,6,7,8,9) x<-c(2,3,4,5,6,7,8,9) y<-c(9,8,7,6,5,4,3,2) z<-c(9,8,7,6,1,2,3,4) data<-cbind(x,y,z) row.names(data)<-c('a','b','c','d','e','f','g','h') which gives: x y z

Dear List, I am not sure if A) this is possible or B) the correct place to ask. I am looking to find the mean - i have n, and the two-tailed confidence intervals 0.95 & 0.25 with a p-value of 0.05. Can i find the mean from this data ? Thanks Peter

Dear all, How can I run a constrained correspondence analysis with the following data: 15 animals were measured repeatedly month-wise (over to 2 years) according to ther diet composition (8 food categories). our data.frame looks like this: food 1 2 ... 8 sex season year animal freq 12 8 ... 1 0 summer 2011 1 freq 0 7 ... 0 1 winter 2011 1 ... freq 0 7 ... 0 1 spring 2011 15 We

Hello, I'm trying to permute a vector of positive integers > 0 with the constraint that each element must be <= twice the element before it (i.e. for some vector x, x[i] <= 2*x[i-1]), assuming the "0th" element is 1. Hence the first element of the vector must always be 1 or 2 (by assuming the "0th" element is 1). Similarly, the 2nd must always be below/= 4, the

Martin: It sounds like you are doing is more akin to shuffle selection than fusion and therefore it's a better fit for instruction selection than DAGCombining. Try movign it to <Target>ISelDAGToDAG's Select (or potentially PreprocessISelDAG). Th -Nirav On Tue, Mar 6, 2018 at 4:05 PM Martin J. O'Riordan <MartinO at theheart.ie> wrote: > We discovered what is

Hi, I need to permute the rows of a matrix, where each row is independently rearranged. A simple solution is this: shuffled <- datamatrix <- matrix(1:24, ncol = 4) for (i in 1:nrow(datamatrix)) { shuffled[i, ] <- sample(datamatrix[i, ]) } > datamatrix [,1] [,2] [,3] [,4] [1,] 1 7 13 19 [2,] 2 8 14 20 [3,] 3 9 15 21 [4,] 4 10 16 22 [5,]

Hello, I'm using R code that includes a residual permutation that was written as a supplement to the paper: Turner et al. 2010. A general hypothesis-testing framework for stable isotopes ratios in ecological studies. Ecology 91:2227-2233. The supplemental code is available at: http://www.esapubs.org/archive/ecol/E091/157/suppl-1.htm When I execute the function, no warnings are given

Hi! I am a relatively new user of R and I use it to prepare my dissertation. I have come to some very usefull and specific libraries written for S-PLUS 4 and would like to use them in R. Is that possible? I just found out that one of these libraries has already been transfered to R, while 3 others have not. For the matter of beeing more exact I''m interested in the dealing with missing

We discovered what is happening. SDAGCombiner essentially looks at various combinations of nodes to do with vectors, and when it can, it creates a vector shuffle. The problem is, that our vector shuffle lowering builds new trees with vector element, or vector sub-vector insert sequences. The generic DAGCombiner, reconstructs these into a new shuffle, and so the loop continues - we reduce it,

> Please note that dot products of simple vector floats are usually > faster > in the scalar units. The add across and transfer to scalar is just too > expensive. Or do four at once, with some shuffling (which is basically free); almost the same code as a 4x4 matrix/vector multiply. <p>Segher --- >8 ---- List archives: http://www.xiph.org/archives/ Ogg project homepage:

Hi, I was wondering if someone can tell me what is the difference between "strata" argument (function "adonis" in "vegan" package) and using random effects in PERMANOVA+ add-on package to PRIMER6 when doing permutational MANOVA-s? Is the way permutations are done the same? Thank you very much in advance, Vesna -- View this message in context: