similar to: running R script on linux server

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Dear sir, I want to submit R batch jobs (e.g. 5) under the linux cluster by the script file "do_mul". The script file "do_mul" " #!/bin/bash export var for var in $(seq 1 5) do qsub -v var do_test done exit 0 " Through "do_mul", 5 "do_test" script files are submitted to the cluster. The script file "do_test": " #!/bin/bash -l

Hi R-users, I have a list mylist <- list(c(0.79, 0.92, 0.91, 0.86, 0.96, 0.96, 0.95, 0.94, 0.99), c(0.28, 0.45, 0.59, 0.69, 0.80, 0.87, 0.95, 0.94, 0.98), c(0.29, 0.39, 0.59, 0.69, 0.68, 0.80, 0.93, 0.95, 0.98)) Is there a way to find the index of the list element that contains the lowest value among all the other elements? As the lowest value in each element is the first, the

Hello: Anybody knows how to run Rmpi through PBS (Portable Batch System) on a cluster computer. I'm using a supercomputer which require to submit jobs to PBS queue for dispatching. I tried use mpirun in my PBS script. But all my Rslaves are spawned to the same node. This is not desired. Any suggestions are welcome! Thanks in advance. ======================================== Shengqiao Li

Dear Experts, I know there are many HPC (high performance computing) experts on this list. I'd like to ask your advise. Almost two decades ago I chose to go with OpenPBS (turned down condor and other alternatives for whatever reason) for clusters and number crunchers I support for the Department at the university. It turned out to be not bad, long lived choice. At some point I smoothly

Hello R-users, I have a very large vector (a) containing elements consisting of numbers and letters, this is the i.e. a [1] "1.11.2a" "1.11.2d" "1.11.2e" "1.11.2f" "1.11.2x1" "1.11.2x1b" [7] "1.11.2x2" "1.11.2x2a" "1.11.2x2b" "1.11.2x3" "1.11.2x4"

Dear all, please could you advise me on the following : I've written a R script that reads 3 arguments from the command line, i.e. : " args <- commandArgs(TRUE) TUMOR <- args[1] GERMLINE <- args[2] CHR <- args[3] ". when I submit the R script to a PBS HPC scheduler, I do the following (below), but ... I am getting an error message. (I am not posting the error message,

Hi I am having difficulty getting the right format for a lattice plot I am trying to produce. Here is a pic of the plot as I get it now http://i235.photobucket.com/albums/ee37/scotrivers/lattice_plot01.jpg and here is the code I am using: RN<-read.csv("N:/data.dat",header=T) DATA<-RN[is.element(RN$age,0:3),] #select data on age

This sounds like an operating system specific question, in that "submit the R script to a PBS HPC scheduler" would be the kind of action that would run R with very different environment variables and possibly different access credentials than your usual interactive terminal. A thorough reading of the "Installation and Administration Guide" and some study of your HPC

Wayne, Hello, I saw a post of yours out on samba.org and was wondering if you might be able to shed a little light on a problem I'm having with rsync. My rsync source files are all off of nfs mounts and the destination directories are all nfs mounts. The owner and groups all end up as nobody/nobody on the destination, despite being all sorts of owners and groups on the source. Have you

Hi, The problem is most likely, you need to call a R CMD BATCH with your arguments and the R-script inside of a shell script that you submit to your qsub. Unfortunately we don't use qsub anymore so can't test it, but it should be as follows: R-script eg. test.R: > ##First read in the arguments listed at the command line > args=(commandArgs(TRUE)) > > ##args is now a list of

I don't know whether this is an RODBC issue, a psqlodbc issue or a PostgreSQL issue; I've searched the documentation and forums for each, with no success. I want to list all the tables in a PostgreSQL schema, and return the table comments as well as the table names. As an example, one table is defined as follows: CREATE TABLE scen990.ezone_locationprice_year1 ( ezone integer NOT NULL,

Hi R-users, I have a function (myfun) that I want to apply to the rows of a matrix. Basically, "myfun" takes the values from the matrix ("exp.des"), which represent the different combinations of my experimental design, and pass them as arguments to some other functions (fun1 and fun2). As I want to replicate the results of fun1 and fun2 a certain number of time (e.g. 5), I

Hi Chris, Thanks for your response! Wu Wei made this happen! and he is organizing LLVM social in Shanghai, Hang Zhou and Shen Zhen. I hope one day there is LLVM developer meeting in China :) 在 2018年05月29日 14:13, Chris Lattner 写道: > This is really great, thank you for getting this off the ground! > > -Chris > > >> On May 28, 2018, at 9:42 PM, Leslie Zhai <lesliezhai at

Hi all, We have been fighting with telco for a entire week. Today they came here with a LITE3000 to analyze what is going on. When I configure zaptel with no external clock, E1 gets aligned/synchronized with bit rate in 2048000 bps, both me and telco. span=4,0,0,ccs,hdb3,crc4 But when I configure span4 to get clock source from telco they become unsynchronized. TElco bit rate stays in

I am currently looking at putting together an Asterisk PBX system for my home office. One of the things I need is an expandable 2-line corded/cordless phone system. If I wasn't using Asterisk, I'd be getting one of these AT&T systems with 2 extra handsets. http://telephones.att.com/attui/shop/product_detail.cfm?itemID=ad53fe08-495e-41b6-b390-3aaa1c84cc40 So, the question is,

Hi, I had originally posted regarding an error when trying to install package - GenABEL - it has now become clear that R is not able to connect to the net. Below are a couple of things I've tried with the resulting errors I am running R 2.6.2 on Linux e15 X86 How can I fix this? Thank you! 1) download.file("http://www.nytimes.com", destfile<-tempfile()) Error: trying URL

在 2018年05月29日 14:58, mayuyu.io 写道: > Any hint on the date of LLVM Social ShangHai? Wu Wei scheduled July 1th http://hellollvm.org/ > > Zhang > >> 在 2018年5月29日，14:22，Leslie Zhai via llvm-dev <llvm-dev at lists.llvm.org> 写道： >> >> Hi Chris, >> >> Thanks for your response! >> >> Wu Wei made this happen! and he is organizing LLVM social in

Hi everyone, There are a number of issues with the current name of the Clang project: * It is prone to incorrect type setting, typically as CLang, CLANG, or most commonly c̦҉̫̘̺̹̖̗͒͆͋̈̃̇߯l߲҉̷̡̰̖͈̤̺͒҆̾̚͡͝a̺̹͍̔߭͠ͅn͋́͡g̱߫̉ * The C++ compiler ends in the string "g++", which causes problems for compiler wrapper scripts * The name has been used by a kickstarter project

Dear all, I facing pbs using RODBC library. I'm working on a Linux (Ubuntu Gutsy) os, with R version 2.5.1. I've got Postgresql 8.2.5 installed with the odbc-postgresql package. I try to connect in a R session to a postgresql database using: odbcConnect(dsn="thedatabasename",uid="theuser",pwf="thepasswd",case="postgresql") I get a message error,