similar to: ncdf installation in R

Friends, I tried to install ncdf package in ubuntu with the following command. R CMD INSTALL --configure-args="-with-netcdf_incdir=/apps/netcdf/4.0.1/gcc/include -with-netcdf_libdir=/apps/netcdf/4.0.1/gcc/lib" ncdf_1.6.tar.gz The installation was stopped throwing the following error. I tried to google it but didnt find any solution. someone kindly write me what is going wrong. **

Dear all, working with R under Linux, I am not able to install the ncdf-package. The following appears: install.packages("ncdf") Warnung in install.packages("ncdf") : argument 'lib' is missing: using '/user/silke/R/x86_64-unknown-linux-gnu-library/2.6' --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done versuche URL

Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc

Dear All, I recently got a 64bit machine and had netcdf-3.6.2 installed. Then I tried to install ncdf package but got the following error message when using netcdflib: gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include -I/home/ljin/share/R-2.6.1/include -I. -I/usr/local/include -fpic -g -O2 -c ncdf2.c -o ncdf2.o gcc -std=gnu99 -I/home/ljin/share/R-2.6.1/include

Greetings. I am attempting to add NetCDF libraries within R, and have failed. We have R version 2.8, and are running on a 64-bit Redhat Linux 2.6.18 kernel: Red Hat Enterprise Linux Client release 5.2 (Tikanga) Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5 09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux I have run the installation instructions found at

Dear all, I'm having issues with the installation of the ncdf package. It returns a non-zero exit status. Can anyone suggest what I should do next? FYI, I do not have problems installing other packages. Thanks. Muhammad * installing *source* package ?ncdf? ... checking for nc-config... /usr/local/bin/nc-config configure: creating ./config.status config.status: creating src/Makevars **

Hello, I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1. Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local. When attempting to install ncdf4 it is failing with: ** testing if installed package can be loaded Error in

Buenas tardes, pido disculpas si mi consulta es demasiado elemental, pero actualmente encuentro una gran barrera para continuar mi trabajo si no lo solvento. Soy usuaria principiante de R, estoy trabajando con una base de datos climática <https://digital.csic.es/handle/10261/104742>que se encuentra en formato netcdf4 y necesito transformarla a la versión 3 con el fin de visualizarlo en un

Dear All, Can anyone please let me know how exactly ncdf deals with NaN. I am trying to pass in a vector of data that has some NaN in it, into a variable in NetCDF. dimX <- dim.def.ncdf("X","count",(1:6)) dimY <- dim.def.ncdf("Y","count",(1:3)) var1 <-

Should one ask questions relating to the R package 'ncdf' here? or look for a more netCDF-oriented (but probably less R-oriented) list? Why I ask: I'm relatively new to R, which I've only used in the past for graphics. I'm trying to learn R as an alternative to manipulating netCDF files with NCO (which works well but lacks all the other R goodnesses). Hence I've got a

Dear R communities Could you please help me with the problem I encounter while trying to install the ncdf package? download.packages("ncdf", "/home/user/soft/R/library/") cd /home/user/soft/R/library R CMD INSTALL ncdf_1.6.tar.gz # fail sudo R CMD INSTALL ncdf_1.6.tar.gz # fail cd /home/user/soft/ # download

Dear all, I have a problem in writing a variable to a NetCDF-File. My code works pretty well until the step put.var.ncdf(): # Get variables #--------------------- data1 <- open.ncdf("PREC_me_03-1500.nc") prec1 <- get.var.ncdf(data1,"PRECT") dim.time <- get.var.ncdf(data1,"time2") close.ncdf(data1) # Calculation #--------------------- spi24.me <-

Greetings all, I recently tried to install RNetCDF from within R (install.packages) on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already installed). This resulted in an error because the netcdf header files are installed in /usr/include/netcdf-3 rather than /usr/include which is where RNetCDF looks for them. This problem was described in a 2006 post (see below), but no

I imagine this "where are your header files" problem comes up in other packages, so I'm asking this as a general R question. How should configure scripts be re-written so they look in more places? Briefly, the problem is that Fedora-Extras installs the header files in a subdirectory /usr/include/netcdf-3 rather than /usr/include: # rpm -ql netcdf-devel /usr/include/netcdf-3

Hello I'm trying to install the "ncdf" package on a Ubuntu 10.04 laptop. Can you offer suggestions to install this package? > install.packages("ncdf", repositories = TRUE) Installing package(s) into ‘/home/steve/R/i486-pc-linux-gnu-library/2.12’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done

Hi I used the command R CMD INSTALL ncdf to install ncdf package in linux. Can somebody explain to me what might be wrong. Thanks. Below is the error. * Installing *source* package 'ncdf' ... Special note: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for

Hello, I am a new user of R and Linux (debian squeeze), and I am trying to install the ncdf library. First I don't know wich is the best to use (ncdf or ncdf4), But not matter the one I tried to install, it always failled. I try to find a solution to this common problem on the web, but I never find the good way to solve it. I hope you could help me I try many things during two days and now I

Dear all, I am attempting to convert 10 NetCDF files into a single NetCDF file, due to the data input requirements of a model I hope to use. I am using the ncdf package, version 1.6. The data are global-scale water values, on a monthly basis for 10 years (ie. 120 months of data in total; at present the data are separated by year, with 12 months of data in each file - mrunoff_1986 through to

Redhat's Security Enhanced Linux (in some modes) generates messages like that when code in a shared library is not compiled to have position independent code. I.e., the -fpic or -fPIC flag was not supplied when compiling. Your build log showed that -fpic was used when compiling your code, but the 3rd party library, libnetcdf.a may not have been compiled this way. The command

Hi, I am using the package ncdf to create netCDF files and I want to mimic the the header of an exiting netCDF file created outside of R. Below is what the existing header looks like (part of it that is different): netcdf ccd1984_05_08 { dimensions: lat = 1974 ; lon = 1894 ; time = UNLIMITED ; // (1 currently) variables: int time(time) ;