similar to: R CMD SHLIB changes function name when compiling

Hi,all I have a problem running R.matlab package (under 2.10.1 version). I can set up the matlab server under local machine(run the MatlabServer.m), " And I can use setVariable and evaluate matlab functions in R. But when I ask Matlab to send the value back to R using getVariable function it always returns an error: " ??? Error: A MATLAB string constant is not

Hello, I wonder if it is unwise to name a bundle the same as one of its packages. For instance, I now have a huge package called 'aroma' that I basically want to split up in several smaller packages, say 'aroma.core', 'aroma.io', 'aroma.explore', 'aroma.trial', 'aroma.deprecated' etc, which simplifies maintenance but also the overview. For

I don't know if this is the correct forum to ask the following question; however, when I search the aroma.affymetrix discussion group, it suggested that I should posted the question to r-help. Here it goes. I followed the instructions on aroma.affymetrix trying to install the packages; following are the steps: > install.packages(c("R.oo", "R.utils"),

Hi. Is it possible to make gpr from raw? library(aroma) #read gpr file gpr <- GenePixData$read("gpr123.gpr", path=aroma$dataPath) # gpr -> raw raw <- as.RawData(gpr) # raw -> ma ma <- getSignal(raw, bgSubtract=FALSE) ma.norm <- clone(ma) #normalization normalizeWithinSlide(ma.norm, "s") #ma -> raw raw2 <- as.RawData(ma) I want to make gpr data from

During installation of a package, Makevars/Makefile in src/ is processed. I've always considered the purpose of this for compiling native code. Is that it's solely purpose, or is it alright to use it also for non-code compilation purposes, e.g. building inst/ subdirectories on the fly? If not, are there other means to create non-static inst/ subdirectories during installation? The

Hi, I have a microarray dataset of dimension 25000x30 and try to clustering using hclust(). But the clustering on the rows failed due to the size: > y<-hclust(dist(data),method='average') Error: cannot allocate vector of size 1.9 Gb I tried to increase the memory using memory.limit(size=3000), still got the same error. I also tried agnes() from cluster package and pvclust() from

FYI, I'm sure the following is a temporary issue, but in case it slips through, I want to raise it here. On Windows 7 64-bit, running Rcmd check on R devel gives: * using R version 2.13.0 Under development (unstable) (2011-02-11 r54330) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'aroma.core/DESCRIPTION' ... OK * this is

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Hi List, I'm trying to install aroma.affymetrix, which depend on many packages, affyio is one of them. The task is done on 32-bit Linux without problem. The same task was done on Solaris 9 with R-2.5.1 without problem. Following is the error message when installation affyio. I did try to put a file stdint.h I got from the web in the path, but got more error messages. Jun root@biostatsun1

Hello All. I must be missing the really obvious here: mm <- function(d, i) median(d[i]) b1 <- boot(gravity$g, mm, R = 1000) b1 b2 <- boot(gravity$g, mm, R = 1000, strata = gravity$series) b2 Both b1 and b2 seem to have done (almost) the same thing, but it looks like the strata argument in b2 has been ignored. However, str(b1) vs str(b2) does show that the strata have been noted

Hello Again Gurus and Lurkers: I?m trying to build a very user-friendly function which does aov without having the user type in a formula (which would be tedious in this case). The idea is to take the response from a PCA score matrix, and the factors from a list. A simple example is the function given below, along with test data and a sample call to the function. I'm certainly having

Hi, I got an interesting programming challenge: How do you inspect an object which is assigned via delayedAssign() and that throws an error as soon as it is "touched" (=the value is evaluated)? Is it possible? MINIMAL EXAMPLE: $ R --vanilla > delayedAssign("foo", stop("Hey!")) (If you find this minimal example silly/obvious, please skip down to the real

Hi, I have found an unwanted feature in the Rd to LaTeX convertion regarding \preformatted inside a \section. I have created an Rd example below, which generates an error in the following 'R CMD check' step * creating aroma.affine-manual.tex ... OK * checking aroma.affine-manual.tex ... ERROR LaTeX errors when creating DVI version. This typically indicates Rd problems. I believe

Hi, in my package, I've got a 'configure' file in the root, e.g. aroma.affymetrix/configure. (I've also got a configure.win, which works just fine on Windows). This file must be executable (has a proper file mode) for 'R CMD INSTALL'/install.packages() to work, otherwise one gets: * installing *source* package 'aroma.affymetrix' ... ERROR: 'configure'

I'm rather frustrated in trying to run the examples on the robustSmoothSpline. No matter what packages I load, I still come up with the error as follows. Error: could not find function "robustSmoothSpline" Am I missing something?

Hi All, It seems that the question of how may people use (or download) R, and it's packages is one that comes up on a fairly regular basis in a variety of forums (There was also recent thread on the subject on Stack Overflow). A couple of students at UCLA (including myself), wanted to address the issue, so we set up a system to get and parse the cran.stat.ucla.edu APACHE logs every night, and

Hello, I've been having some trouble working with the aroma package and have realized that it's my ebimage is at the root of the problem. The package builds but during testing it fails because of an undefined symbol as seen below: installing to /usr/local/lib64/R/library/EBImage/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices **

Hello, I've got a DESCRIPTION file with a the first line: Package: Repitools But, when I run R CMD INSTALL Repitools I get: * installing *source* package Repitools ... ** R ** data ** inst ** preparing package for lazy loading Warning in FUN(X[[1L]], ...) : Created a package name, "2011-04-20 09:05:40", when none found ** help *** installing help indices ** building package

waited for the aroma of burnt electronics. There wasn't any so I went to the next room and plugged in a telephone on the wall outlet. I picked up the handset and it rang my asterisk box. I dont have any phone service. The phone is working fine and have used it for hours listening to podcasts. And I can plug it to any phone in the house. Now I am thinking if I can plug another phone

Hi, sessionInfo() has been proven really useful, but you still often have to ask for additional information in order to help troubleshooting. For instance, for troubleshooting the aroma.affymetrix, it is very helpful to know what the current working directory is, for other packages certain system environment variables might be useful and so on. One solution could be to provide support for hook