similar to: Prediction plot for logistic regression output

Hello. I'm trying to analyze data, which is looking at the relationship between temperature and survival for fish (from fertilization to emergence). Looking at the raw data, there appears to be a bell shaped relationship. Ordinarily for survival data, I would run a generalized linear model (because the data has a binomial error structure). However, I am thinking that running a generalized

Hi. I am getting an "unexpected symbol" error, which I haven't gotten before. I have checked my data and searched the FAQ. I hoping someone has a suggestion on what I might be doing wrong? Thanks! A. Gray Fisheries Consultant Here's the code I'm using and the error: > 0708smolts <- read.csv("C:\Documents and Settings\ayesha\My

Hi, I use samba 3.0.26a on fedora 8 as a fileserver for a win 2k3 domain. This has worked fine for about 2 months without any problems. However I came to the server 3 days ago and the harddrive was 100% full. On checking I found 60gb of core dumps in the winbind folder. I did a lot of searching and couldnt find anything relevent for this release. I tried upgrading samba to 3.0.28 (fc8

Dear R-list. I have done a logistic glm using Age as explanatory variable for some allergic event. #the model model2d<-glm(formula=AEorSAEInfecBac~Age,family=binomial("logit"),data=emrisk) #predictions for age 30 and 60 preds<-predict(model2d,data.frame(Age=c(30,60)),se.fit=TRUE) # prediction interval

a closer look to the help on predict.glm will reveal that the function accepts a 'type' argument. In you case 'type = response' will give you the results in probabilities (that it seems to be what you are looking for). There also is an example on use of the 'type' argument at the end of the page. Stefano -----Messaggio originale----- Da: r-help-bounces at r-project.org

Hi, I am new to R. Anyone can explain the following from R-help or anyone can direct me how to calculate odds ratio from logistic model in R. Thank you very much. Guoya Stefano <stecalza at tiscalinet.it <https://stat.ethz.ch/mailman/listinfo/r-help> > writes: >Hi all. > >A simple question. >Is there a function to compute the Odds Ratio and its confidence intervall,

Hi all. A simple question. Is there a function to compute the Odds Ratio and its confidence intervall, from a logistic model (glm(.......,family=binomial....). I've written my own, but certainly someone did a better job. Thank you in advance, Stefano *********************************************** Stefano Calza Istituto di Statistica Medica e Biometria Universit? degli Studi di Milano Via

Dear list: Thanks a lot for help. I have a question and I could not find clear answers easily. When we do logistic regression for one type of events of interest as a proportion of a broader types of events, does the logistic regression assume that the number of whole types of events should be independent with the number of type of interest? For example, if one type of events and the whole type

Dear list, I'm a bit perplexed why the 95% confidence bands for the predicted probabilities for units where x=0 and x=1 overlap in the following instance. I've simulated binary data to which I've then fitted a simple logistic regression model, with one covariate, and the coefficient on x is statistically significant at the 0.05 level. I've then used two different methods to

I have the following binary data set: Sex Response 0 1 0 159 162 1 4 37 My commands library(MASS) sib.glm=glm(sib~sex,family=binomial,data=sib.data) summary(sib.glm) The coefficients in the output are Estimate Std. Error z value Pr(>|z|) (Intercept) -3.6826 0.5062 -7.274 3.48e-13

Dear all, I am trying to apply the logistic regression to determine the limit of detection (LOD) of a molecular biology assay, the polymerase chain reaction (PCR). The aim of the procedure is to identify the value (variable "dilution") that determine a 95% probability of success, that is "positive"/"total"=0.95. The procedure I have implemented seemed to work looking

Dear R-help, Would it be appropriate to do the following to calculate a p-value for the difference between c-ind of x1 and c-inx of x2 using the output from rcorrp.senc() > r<-rcorrp.senc(x1,x1,y) > pValue<-1-pnorm((r[11]-r[12])/(r[2]/r[5])*1.96) Osman O. Al-Radi, MD, MSc, FRCSC Chief Resident, Cardiac Surgery University of Toronto, Canada

Dear all: "predict.glm" provides an example to perform logistic regression when the response variable is a tow-columned matrix. I find some paradox about the degree of freedom . > summary(budworm.lg) Call: glm(formula = SF ~ sex * ldose, family = binomial) Deviance Residuals: Min 1Q Median 3Q Max -1.39849 -0.32094 -0.07592 0.38220 1.10375

The error msg is telling you that R cannot evaluate the loss function, so you should not expect answers. You might try examining the data -- Are there NA or Inf entries? Or prepare a dataframe with just X and Y, sort by X and graph. Then check the nls computations by sampling, say, every 100 X's to give you a dataset with about 160 observations. If that doesn't work, it is at least

Hi, Is there any similar command to "predict" which can be used with a logistic random effects model? I have run a random effects model using "lme()", and then use "predict.lme()" with no problems. However, I would also like to run a logistic random effects model, and then also run a predict command on the logistic random effects model. If I use "lme()",

Hi, I have below logistic regression Dat = read.csv('https://raw.githubusercontent.com/sam16tyagi/Machine-Learning-techniques-in-python/master/logistic%20regression%20dataset-Social_Network_Ads.csv') head(Dat) Model = glm(Purchased ~ Gender, data = Dat, family = binomial()) How I can get Standard deviation of forecasts as head(predict(Model, type="response", se.fit =

Hello, I am pretty new to R, I have always used SAS and SAS products. My target variable is binary ('Y' and 'N') and i have about 14 predictor variables. My goal is to compare different variable selection methods like Forward, Backward, All possible subsests. I am using misclassification rate to pick the winner method. This is what i have as of now, Reg <- glm (Graduation ~.,

Greetings, We are performing a meta-analysis of mink pup survival data versus chemical concentration. We have modeled percent survival successfully using nls as shown below and the plot. What we need to do is construct a confidence interval on the concentration at which we get 50% survival (aka the EC50, although we may want other percent survivals in the future). My first question is, what seems

I am trying to get a prediction interval from a glm regression. With newdat being my set of values to be fitted, and glmreg the name of my regression, I am using the following code. predict(glmreg, newdat, se.fit = TRUE, interval = "confidence", level = 0.90) The problem is that I am only getting the standard error and the fitted value, not a prediction interval. Any help would be

Dear all, I'm using zeroinfl() from the pscl-package for zero inflated Poisson regression. I would like to calculate (aproximate) prediction intervals for the fitted values. The package itself does not provide them. Can this be calculated analyticaly? Or do I have to use bootstrap? What I tried until now is to use bootstrap to estimate these intervals. Any comments on the code are welcome.