similar to: Time and space considerations in using predict.glm()

Hello, I am using R to train a logistic regression model and save the resulting model to disk. I am then subsequently reloading these saved objects, and using predict.glm on them in order to make predictions about single-row data frames that are generated in real-time from requests arriving at an HTTP server. The following code demonstrates the sort of R calls that I have in mind: > cases

Hi, I'm trying to build dendrograms to pass to heatmap(). The dendrograms I build plot properly, but when I pass them to heatmap() I get the error message "row dendrogram ordering gave index of wrong length" (see output log below). I looked in the code of heatmap() and saw that the error was due to a NULL return value from order.dendrogram(), which in turn got a NULL return value

https://bugzilla.samba.org/show_bug.cgi?id=11027 Bug ID: 11027 Summary: Sticky bit not set when using --chmod=D+t alone, without --perms Product: rsync Version: 3.0.9 Hardware: All OS: All Status: NEW Severity: normal Priority: P5 Component: core Assignee:

Dear List, With regard to the question I previously raised, here is the result I obtained right now, brglm() does help, but there are two situations: 1) Classifiers with extremely high AIC (over 200), no perfect separation, coefficients converge. in this case, using brglm() does help! It stabilize the AIC, and the classification power is better. Code and output: (need to install package:

I have fitted a logistic regression model > failed.lr2$call lrm(formula = failed ~ Age + task2 + Age:task2, data = time.long, na.action = na.omit) using the Design package functions and would like to generate a nomogram from this model. the datadist information is generated and stored in > ddist time.long$Age time.long$task2 Low:effect 45

Dear All, I know this may be a trivial question. In the past I have used glm to make logistic regressions on data. The output creates an object with the results of the logistic regression. This object can then be used to make predictions. Great. I have a different problem. I need to make predictions from a logistic regression taken from a paper. Thus I need to (by hand) enter the reported odds

I am trying to use predict.glm to validate a logistic model. Using predictions <- predict.glm(logit.model, type="response", dataframe="validate") I get the predictions from the original dataframe, not the validation data frame. Am I missing an input to the method or is this what is supposed to happen?

Hi, I know this is probably a basic question... But I don't seem to find the answer. I'm fitting a GLM with a Poisson family, and then tried to get a look at the predictions, however the offset does seem to be taken into consideration: model_glm=glm(cases~rhs(data$year,2003)+lhs(data$year,2003), offset=(log(population)), data=data, subset=28:36, family=poisson()) predict

On 27/04/2018 9:25 AM, Hadley Wickham wrote: > Hi all, > > Very surprising (to me!) and mystifying result from predict.glm(): the > predictions vary depending on whether or not I use ns() or > splines::ns(). Reprex follows: > > library(splines) > > set.seed(12345) > dat <- data.frame(claim = rbinom(1000, 1, 0.5)) > mns <- c(3.4, 3.6) > sds <- c(0.24,

Hi All. New AIX packages of OpenSSH 3.6.1p1 are available for download at [1]. There are two tarballs, one for the as-distributed code and one with the password expiration patch. Each tarball contains binaries for AIX 4.x and AIX 5.x. The usual caveats apply (see page). These packages have been more popular than I ever thought they'd be. They are about to clock up the one thousandth

Hello I am playing around trying to bootstrap an svm model using a training set and a test set. I've written another function, auc, which I call here, and am bootstrapping. I did this successfully with logistic regression, but I am getting an error from the starred ** line which I determined with print statements. How do I tune an svm in a bootstrap? I can't find sample code

Hello, Probably a stupidly easy question, but I have done the following in order to make predictions from a fitted glm with new data: my.glm <- glm(lt96~so296[,1:17],family=binomial(link=logit)) p96 <- predict.glm(my.glm,newdata=so293[,1:17],type="response") but I always get the fitted linear predictors from the original model, ie there doesn't seem to be acknowledgement of

Could you just use lines(newX, myPred, col=2) -----Original Message----- From: r-help-bounces at stat.math.ethz.ch [mailto:r-help-bounces at stat.math.ethz.ch]On Behalf Of Paul Johnson Sent: Thursday, September 23, 2004 10:3 AM To: r help Subject: followup: Re: [R] Issue with predict() for glm models I have a follow up question that fits with this thread. Can you force an overlaid plot

I am fittling a spline to a variable in a regression model, I am then using the predict.glm funtion to make some predictions. When I use bs to fit the spline I don't have any problems using the predict.glm function however when I use ns I get the following error: Error in model.frame(formula, rownames, variables, varnames, extras, extranames, : variable lengths differ (found for

Dear R users, I'm trying to understand how to derive the actual predictions (in terms of class) using predict.glm. Consider this example: mydf=data.frame(A=sample(rnorm(1000), size=1000, replace=T), B=sample(rnorm(5), size=1000, replace=T), C=sample(rnorm(10), size=1000, replace=T), class=sample(c("a", "b"), size=1000, replace=T)) mydf.glm=glm(class ~ .^2, data=mydf,

I am not sure whether it is a design decision or just an oversight. When I ask for the standard errors of the predictions with predict(budwm.lgt,se=TRUE) where budwm.lgt is a logistic fit of the budworm data in MASS, I got Error in match.arg(type) : ARG should be one of response, terms If one is to construct a CI for the fitted binomial probability, wouldn't it be more natural to do

Nelly Reduan a partag? un fichier OneDrive avec vous. Pour l?afficher, cliquez sur le lien ci-dessous. <https://1drv.ms/u/s!Apkg2VlgfYyDgRAeVIM0nEajx0Fb> [https://r1.res.office365.com/owa/prem/images/dc-png_20.png]<https://1drv.ms/u/s!Apkg2VlgfYyDgRAeVIM0nEajx0Fb> Screenshot 2017-11-12 18.49.43.png<https://1drv.ms/u/s!Apkg2VlgfYyDgRAeVIM0nEajx0Fb> Hello How can I perform

I've been attempting to calculate the predictions from a poisson glm object, along these lines: predict(foo.glm, type = "response") and predict(foo.glm, type = "response", se.fit = TRUE) foo.glm is arrived at this way: foo.glm <- glm(Insects ~ Dad * Mum + Location, offset = log(MM), family = "poisson", data = model.df) There are two

Hi all, Very surprising (to me!) and mystifying result from predict.glm(): the predictions vary depending on whether or not I use ns() or splines::ns(). Reprex follows: library(splines) set.seed(12345) dat <- data.frame(claim = rbinom(1000, 1, 0.5)) mns <- c(3.4, 3.6) sds <- c(0.24, 0.35) dat$wind <- exp(rnorm(nrow(dat), mean = mns[dat$claim + 1], sd = sds[dat$claim + 1])) dat <-

Hello all, I've come across an online posting http://www.biostat.wustl.edu/archives/html/s-news/2001-10/msg00119.html that described how to get confidence intervals for predicted values from predict.glm. These instructions were meant for S-Plus. Yet, it generally seems to work with R too, but I am encountering some problems. I am explaining my procedure in the following and would be most