similar to: Independent variables omitted in lm and glm

Displaying 20 results from an estimated 100 matches similar to: "Independent variables omitted in lm and glm"

2010 Aug 17
2
AIC in MuMIn
Hello, I am using package MuMIn to calculate AIC for a full model with 10 explanatory variables. Thanks in advance in sharing your experience. Q1 In the AIC list of all models, each model is differentiated by model number. Please kindly advise if it is possible to find the corresponding explanatory variable(s) for the model number. Q2 error message I tried to display sub-model with only
2010 Jul 17
2
cca in vegan (formula instead of community matrix data)
Dear List, I tried to do cca based on species data and environmental variables (formula instead of community data). However, there was an error saying row sums must be >0. I searched the previous related messages but found few solutions. Please kindly help and thank you in advance. code This is vegan 1.17-3 Warning message: package 'vegan' was built under R version 2.10.1
2012 May 10
1
envfit output (vegan package) - not sure what it means
I'm pretty new to R and would appreciate some help interpreting the output of a function that was recommended to me. I've used the *envfit *function in the vegan package to plot vectors of four climate variables onto a species matrix ordination. The output indicates that only a single variable (mean_temp) is significant: ***VECTORS NMDS1 NMDS2 r2
2010 Jan 13
3
Operating on each row of data frame
Hi All I have a data frame in which there are 4 columns . Column 1 : name Column 2-4 : values I would like to calculate mean/Standard error of values in column 2-4 and store them in column 5,6 respectively. I have done the following but doesn't seem to work mean_N_SE <-function(x) { name <- x[1] vals <- c(x[2:4]) temp_mean <- mean(vals) SE <- sqrt(var(x)/length(x)) }
2005 Feb 20
2
matrix operations
In R, I'm imported a data frame of 2,321,123 by 4 called "dataF". I converted the data frame "dataF" to a matrix dataM <- as.matrix(dataF) Does R have an efficient routine to treat the special elements that contain "inf" in them. For example, can you separate the rows that have "inf" elements from the matrix into a separate matrix without
2012 Dec 16
3
averaging X of specific Y (latitude)
Hello I have a table describing butterfly range traits. It is composed of three columns as below Species name range size (X) latitude of range midpoint (Y) There are 11 kinds of butterflies. Each has its range size, and the latitude of each range midpoint ranges from 9 to 19. I would like to have the average range size of every degree of latitude. For example, the average range
2009 Aug 24
1
Saving heatmaps as PDFs
Hi, I'm trying to save heatmaps as PDFs. However, the PDF version of the heatmaps (Heatmap_CAFvsTNF_run2.pdf) is blurred when compared to its counterpart, which was saved manually by using the software "Grab" (Heatmap_CAFvsTNF_run2.tiff). -----R code-------- sample_output <- "stroma_run2" filename <-
2000 Jan 06
1
nlme
Among others, datam contains the columns: logconc, tm, dose, subj, bilirubin. None of these are factor variables. The following compartment models work (the first still has not converged after 100 interations): res1 <- nlme(logconc~p2+p3+log(dose/(exp(p1)-exp(p2))* (exp(-exp(p2)*tm)-exp(-exp(p1)*tm))),start=list(fixed=c(5,-2,-0.1)), fixed=list(p1+p2+p3~1),control=list(maxIter=100),
2017 Dec 14
3
Errors in reading in txt files
On Thu, Dec 14, 2017 at 1:58 PM, Berend Hasselman <bhh at xs4all.nl> wrote: > >> On 14 Dec 2017, at 19:36, lily li <chocold12 at gmail.com> wrote: >> >> Hi R users, >> >> I have a question about reading from text files. The file has the structure >> below: >> >> Time Column1 Column2 >>
2008 Dec 20
1
Help in Lattice!
Hi - How can I add different notes in different panels? My data looks like ID Dose Visit Value 1 1 0 0.5 -6.5802e-02 2 1 0 1.0 2.4085e-01 3 1 0 1.5 -2.2907e-01 4 1 0 2.0 2.4074e-01 ... ... ... ... ... 270 45 30 3.0 -8.1316e-01 271 46 30 0.5 -2.0786e-01 272 46 30 1.0 -2.9336e-01 273 46 30 1.5 -5.5657e-01 274 46 30 2.0 -2.1659e-01
2011 Jul 31
3
export/import matrix
Hello I have a problem on keeping the format when I export a matrix file with the write.table() function. When I import the data volcano from rgl package it looks like this in R: > data[1:5,] [,1] [,2] [,3] [,4] [,5] [,6] [,7] [,8] [,9] [,10] [,11] [,12] [,13] [,14] [1,] 100 100 101 101 101 101 101 100 100 100 101 101 102 102 [2,] 101 101 102 102 102 102 102
2017 Dec 15
2
Errors in reading in txt files
I use the method, df$Time = as.POSIXct(df$Time), but it has the warning message: Error in as.POSIXlt.character(x, tz, ...) : character string is not in a standard unambiguous format On Thu, Dec 14, 2017 at 1:31 PM, MacQueen, Don <macqueen1 at llnl.gov> wrote: > In addition to which, I would recommend > > df <- read.table("DATAM", header = TRUE, fill = TRUE, >
2017 Dec 14
3
Errors in reading in txt files
Hi R users, I have a question about reading from text files. The file has the structure below: Time Column1 Column2 01.01.2001-12:00:00 01.01.2001-24:00:00 12 11 01.02.2001-12:00:00 13 10 01.02.2001-24:00:00 11 12 01.03.2001-12:00:00 15 11 01.03.2001-24:00:00 16 10 ... I
2009 Jan 04
1
POSIXct and chron issues with tz
Dear All- I am trying to merge two data files - they have different date formats and different times zones. I need to match up the date/time of the datasets and then invoke a conditional statement, such as: if dataC$mph is >= 12 then keep dataM$co23 for the corresponding time/date stamp. snippets of data files: *dataC.txt* LST in mph Deg DegF DegF2 % volts Deg
2017 Dec 14
0
Errors in reading in txt files
In addition to which, I would recommend df <- read.table("DATAM", header = TRUE, fill = TRUE, stringsAsFactors=FALSE) and then converting the Time column to POSIXct date-time values using as.POSIXct() specifying the format using formatting codes found in ?strptime because the times are not in the POSIXct default format. This example might indicate the idea: >
2017 Dec 14
0
Errors in reading in txt files
> On 14 Dec 2017, at 19:36, lily li <chocold12 at gmail.com> wrote: > > Hi R users, > > I have a question about reading from text files. The file has the structure > below: > > Time Column1 Column2 > 01.01.2001-12:00:00 This line does not contain 3 elements; only one. You'll have to fix that line. Delete it, prepend it with a
2007 Jul 19
2
Trend lines on a scatterplot matrix
I'm using pairs() to generate a scatterplot matrix; pairs(~ Fuzzy.gray.white.ratio+Fuzzy.gw.t.score+AgeWhenTested+signal_mean.noise, data=datam,subset=status=="control",main="Controls", labels=c("G/W","Peak Separation","Age","S/N")) How can I add regression lines to the plots?
2012 Aug 28
1
To predict Y based on only one sample of X and Y
Hello I want to predict wing length using regression commands. (lm and predict) The data details are as followed Data: Bird physiological data 1. body mass 2. body length 3. wing length Data type: Order A: consisting of 20 species, body mass and length of all 20 species are measured Order B: consisting of 2 species, body mass and length of only 1 species is measured Order C:
2007 Jul 18
1
lattice plot axis scaling
I want to generate a lattice plot of a multiple linear regression. I'm using the code: xyplot(y ~ x1 + x2 | status, data=datam, xlab="Peak separation",ylab="G/W",main="G/W vs Fuzzy peak separation: Threshold=1.8", groups=Fuzzy.gw.t.score>1.8, subset=(status %in% c("control","patient","sibling")),
2007 Sep 05
1
problem formatting and positioning title in heatmap
I am using heatmap with the arguments below. The title size stays the same no matter what I set cex.main to. Is this expected? Can I adjust the title size in heatmap? Also, the position of the main title is at the very upper edge of the output and if I use a "\n" to stack the title the upper line is out of bounds and doesn't show up. I am outputting to pdf. Any help? Thanks,