similar to: R CMD build wiped my computer

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

Hi, I ran R (version 2.9.0) CMD build under root in Fedora (9). When it tried to remove "junk files" it removed EVERYTHING in my local account! (See below). Can anyone tell me what happened, and even more importantly if I can I restore what was lost. Panickingly, Jarrod [jarrod at localhost AManal]$ R CMD build MCMCglmm_2.05 * checking for file

You normally see these errors when compiling on a vm that has very little memory. Hadley On Tue, Apr 19, 2016 at 2:47 PM, Ben Tupper <btupper at bigelow.org> wrote: > Hello, > > I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using

Hello, I am getting a fresh CentOS 6.7 machine set up with all of the goodies for R 3.2.3, including dplyr package. I am unable to successfully install it. Below I show the failed installation using utils::install.packages() and then again using devtools::install_github(). Each yields an error similar to the other but not quite exactly the same - the error messages sail right over my head. I

I am running into the following issue that has been previously reported on the R-devel mailing list. The short version is that I'm writing a package for MPI, and I'd like to change CC and SHLIB_LD to "mpicc". Trying to change them in Makevars.in has no effect, because the values are clobbered by /etc/R/Makeconf. Will the following changes to Makeconf.in introduce any problems?

Dear all, I'm having issues with the installation of the ncdf package. It returns a non-zero exit status. Can anyone suggest what I should do next? FYI, I do not have problems installing other packages. Thanks. Muhammad * installing *source* package ?ncdf? ... checking for nc-config... /usr/local/bin/nc-config configure: creating ./config.status config.status: creating src/Makevars **

No, that's not it. The error is that you don't have the g++ binary installed. Undo that change and yum install gcc-c++. On Apr 14, 2015 8:31 AM, Mark Leeds <markleeds2 at gmail.com> wrote: > > Hi: I'm on fedora 19 ( I know. I'm behind : ) and I'm trying to install the > httpuv library > which depends on Rcpp. When I try to install it with dependencies =

Hello, I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1. Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local. When attempting to install ncdf4 it is failing with: ** testing if installed package can be loaded Error in

Hi: I'm on fedora 19 ( I know. I'm behind : ) and I'm trying to install the httpuv library which depends on Rcpp. When I try to install it with dependencies = TRUE, I get the following error. ( I'm only showing the end of the install messages. Things go okay for a good while ). INSTALLATION MESSAGES #================================================================ make[1]:

Hi, yesterday lib-sql got driver-sqlpool with some changes in Makefile.am, but these changes in makefile works only for --with-sql=yes. When --with-sql=plugin is used build fails with: libtool --tag=CC --mode=link gcc -std=gnu99 -O2 -g -pipe -Wall -Wp,- D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 - m64 -mtune=generic -Wall -W -Wmissing-prototypes

On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 10/09/2017 11:16 AM, Paul Smith wrote: >> >> I am trying to install >> >> igraph package >> >> but getting the following error: >> >> ------------------ >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 >> ERROR:

Dear R users I am attempting to add lncdf_1.6.tar.gz libraries within R, and have failed. I have R version 2.8.1, and are running on fedora 10 Kernel Linux 2.6.293.-60.fc10.x86_64. I've run R CMD INSTALL ncdf_1.6.tar.gz and I have the following --------------- * Installing to library '/usr/lib64/R/library' * Installing *source* package 'ncdf' ... checking for gcc... gcc

I have just installed the 64 bit version of R, using yum. The version is: 2.6.2-1.fc7.1.x86_64. I installed zoo without any major problem and the same with quadprog (a few warnings). However, when I came to install tseries I get the following: install.packages() Warning in install.packages() : argument 'lib' is missing: using

Hello, I am trying to install R packages under linux, some of the packages can not be installed and I got the following error, could anybody give me suggestion on where the problem is and how to fix it? Thanks-e > .libPaths() [1] "/usr/lib64/R/library" [2] "/usr/share/R/library" [3]

Dear List, I'm having considerable trouble setting up my environment (Linux, Fedora 16, Bash) to build and check packages under R Under Development (r61660). I'm doing this to better get a handle on difference in the output from running checks on examples in one of my packages. Note I compiled R Under Development myself The problem I am now having is whenever I try to build my analogue

Is there an easy way to override the compile options when installing packages from CRAN on Unix-style systems? I tried setting CFLAGS, CXXFLAGS, and FFLAGS but they are not picked up. For example (with a random package and adding -mtune only to try to get rid of the default) export CFLAGS="-march=native -mtune=native" export CXXFLAGS="-march=native -mtune=native" R CMD

Dear R-devel: The Cluster administrators at KU got enthusiastic about testing R-3.2.2 with Intel MKL when I asked for some BLAS integration. Below I forward a performance report, which is encouraging, and thought you would like to know the numbers. Appears to my untrained eye there are some extraordinary speedups on Cholesky decomposition, determinants, and matrix inversion. They had

Hello, Apologies in advance if this is not the appropriate forum for this post. My problem is I'm not able to install the package "GPLOTS". Below are the outputs for the commands: sessionInfo() and install.packages("gplots",dependencies=TRUE). It seems the package "GDATA" is part of the problem but I'm not an expert in this. The "GDATA" package

I upgraded my system to Fedora Core 7 and got a compilation problem when installing Hmisc package. According to the error messages (shown below), I have tried to updated all of my glibc, gcc, automake rpm packages, but that did not help. Could you help me pointed out what package I have missed? Thank you. > version _ platform i386-redhat-linux-gnu arch i386 os linux-gnu system i386, linux-gnu

On 01 Jul 2016, at 19:09, Juan C. Blanco <jcblanco at fi.upm.es> wrote: > > I Haven't had the time to check the sha1.h error with the new fixes but I've just done so after de 2.2.25 release was out and I'm having the same error: > > gcc -DHAVE_CONFIG_H -I. -I. -I../.. -std=gnu99 -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector