similar to: Question about allocMatrix error message

I need to multiply to very large, nonsparse matrices, and so get the error "allocMatrix: too many elements specified". Is there a way to set the limit for allocMatrix? In my case, the two matrices, A and B, are nxm and mxp where m is small, so I could subdivide each into blocks of submatrices A=rbind(A1,A2,...) and B=cbind(B1,B2,...) then multiply each pair of submatrices, but I was

Dear R family I am attempting to create a matrix. e.g., 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 How could I write a R program? Later I want to extend it to a N by N case. Thanks in advance best Moohwan

Dear R family, I have a question about how to detect some duplicate numeric observations. Suppose that I have two variables dataset. order value 1 0.52 2 0.23 3 0.43 4 0.21 5 0.32 6 0.32 7 0.32 8 0.32 9 0.32 10 0.12 11 0.46 12 0.09 13 0.32 14 0.25 ; Could you help me indicate where the duplicate observations in a row (e.g., 0.32) are? best, moohwan

On Sat, Feb 14, 2009 at 00:17, <ashrafi@ucdavis.edu> wrote: Hi, I was trying to read ~400 chips in an affybatch and I got the same message. Could you find a remedy for that. My server has 128 GB of RAM. However, R halted ever before it uses the memory. I have been able to load upto 250 CEL files but this time I wanted to test what would happen if I want to normalize 400 chips. Thanks

Hello, I have some C code (for a shared lib called via .External) that uses PROTECT(w= allocMatrix(REALSXP, m, n)); mostly successfully. In rare cases, though, the row count m will be an overestimate. Is there a way to reallocate the matrix in-place, something like reAllocMatrix (w,m-excess,n) /* where excess is > 0 */ to chop off the last excess rows of w? I only find out about the

I am having a problem understanding the lda package. I have a dataset here: [,1] [,2] [,3] [1,] 2.95 6.63 0 [2,] 2.53 7.79 0 [3,] 3.57 5.65 0 [4,] 3.16 5.47 0 [5,] 2.58 4.46 1 [6,] 2.16 6.22 1 [7,] 3.27 3.52 1 If I do the following; "names(d)<-c("y","x1","x2") d$x1 = d$x1 * 100 d$x2 = d$x2 * 100 g<-lda( y ~ x1 + x2, data=d) v2

Dear R family I have an arbitrary column vector. 1 2 4 0 7 5 0 0 0 9 11 12 When I attempt to take natural logarithm of the series, as you guess there is an error message. To overcome this problem, my idea is to replace a zero or zeros in a row with appropriate numbers. In order to implement it, I need to detect where zeros are. Then I am going to take the average of two adjacent neighbors. In the

Thanks David, Yes, I am talking about the MASS package.Thank you for pointing out that these scale the same. My question is, how do I get from the V1 data: V1 1 164.4283 2 166.2492 3 170.5232 4 156.5622 5 127.7540 6 136.7704 7 136.3436 to the other set of data: + 1 -2.3769280 + 2 -2.7049437 + 3 -3.4748309 + 4 -0.9599825 + 5 4.2293774 + 6 2.6052193 + 7 2.6820884 On Mon, Sep 28, 2009

Dear all: I¡¯m trying to get unbiased feature importance of my data via package ¡°party¡±, which contains 1-5 integer value, and a few numeric values attributes. The class label is 1-5 integer value as well. In total I have 20 features with 1100 observations. I checked the type my data in R using class(my_data_cell), no factor has been observed. I received a commond error like others did

Dear R family, Suppose I have two series. order value 1 0.52 2 0.23 3 0.43 4 0.21 5 0.32 6 0.32 7 0.32 8 0.32 9 0.32 10 0.12 11 0.46 12 0.09 13 0.32 14 0.25 For these two series, I figured out the way to detect the locations of duplicate values. The next thing to do is remove the repeated values except for a value that would not be next to each other. In other words, while keeping the

Dear R family I have a following question. Suppose I have a matrix as follows, for instance: tau= 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 1 0 0 0 0 I want to calculate (-m) power of tau, for example, m=893. When I run tau^2, the outcome is just tau. Any help would be appreciated. thanks in advance. best moohwan

Hi I'm missing something here but I cannot figure out what. What I can see is that the same code works when I load it via source(...) yet fails when I execute it after loading the package I have built (which includes the code. Below is a transcript of my R session. First I load the code from a file, using source(). Then I execute it fine. Then I remove the function object, I load the

a=[0.1,0.2,0.1,0.3,0.4] b=[0.2,0.3,0.1,0.2,0.5] c=[1,1,1,1,1] log(c+a-x*b) where x=unknown scale variable. int=$$log(c+a-x*b)dadb, where $ denotes integral sign. Actually, how could I calculate the integral's approximation? double summation? best, moohwan

Dear R family I have a following question. Suppose I have a matrix as follows, for instance: tau= 0 0 0 0 1 1 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 1 0 I want to have the inverse of the above matrix and then add some exponent to it. That is, I want to calculate tau to the (-m). For example, m=893. Thanks in advance Best regards Moohwan Kim

Dear R family When I run the command below, the error message came up. It seems like the problem is about computer capacity. It would be appreciated if anyone could give me a solution. ########### > N <- 415884 > tau <- diag(1, N)[c(N, 1:(N - 1)),] Error in array(0, c(n, p)) : 'dim' specifies too large an array Best Moohwan

I want to generate the following outcome using convolution of two sequences. x <- c(1,2,3,4,5) y <- c(6,7,8,9) The resulting convolution vector is 6 19 40 70 100 94 76 45 When using convolve(), it is hard to produce the result above. Would you help me out to get that? Best regards Moohwan Kim

Dear all, I am having trouble creating summary tables using aggregate function. given the following table: Var1 Var2 Var3 dummy S1 T1 I 1 S1 T1 I 1 S1 T1 D 1 S1 T1 D 1 S1 T2 I 1 S1 T2 I 1 S1 T2 D 1 S1 T2 D 1 S2

I suspect that this is simple, but thanks in advance for any advice... I have a dataframe, t2: V1 V2 aaa 3 aaaa 4 aaaaaa 6 a 1 aa 2 V2 is the length of the string in V1 using nchar(as.character(t1$V1)) I'd like to create a third column, that contains a string of the length of V2, but containing an alternate text, e.g. V1 V2 V3

Hi, I am writing an R package with two functions in C++. So far everything works. Now, i would like to write a third function which would use a pointer (it is a pointer to a class object) created by first function. I tried placing this pointer outside of the function definitions (i.e to make it global) but when called in the 3rd function i get > *** caught bus error *** address 0x0,

Hi, I am writing an R package with two functions in C++. So far everything works. Now, i would like to write a third function which would use a pointer (it is a pointer to a class object) created by first function. I tried placing this pointer outside of the function definitions (i.e to make it global) but when called in the 3rd function i get > *** caught bus error *** address 0x0,