similar to: Why the variation when creating .pdf file output for my plots?

Dear Lists: I recently ran quite annoyance problem while running R on Ubuntu 9.10. When running the program, the system suddenly exit from the R session with the following warnings: ############################ ############# OMP: Hint: This may cause performance degradation and correctness issues. Set environment variable KMP_DUPLICATE_LIB_OK=TRUE to ignore this problem and force the program

My machine has 8GB memory. I had quit all other programs that might take a lot of memory when I try the script (before I post the first message in this thread). The cdf file is of only 741 MB. It is strange to me to see the error. On Mon, Dec 28, 2009 at 2:38 AM, Wolfgang Huber <whuber at embl.de> wrote: > Dear Peng Yu > > how big is the RAM of your computer? You could try with

Hello, I have a problem with read.affy.mixed function. I want to read in together a set of CEL files from chip types Affymettrix HGU133A_2 and HGU133_Plus_2. I have my files to be read in in one directory together with a white space delimited file describing them (covdesc). In this directory I give a command: > merge <- read.affy.mixed() Error in merged[[i]] : subscript out of

Hi all, I frequently find that I've failed to export something in my NAMESPACE and hence my package doesn't work when it's imported into another package. Does anyone have suggestion for debugging this type of problem? R CMD check passes without any ns related errors on both the importee and the importer. I've attached a reproducible example - if you install the development

Dear R help list, I have a plot with two different vertical scales that I want to display on either side of the plot. It's quite similar to the Fahrenheit-Centigrade example in the examples section of the documentation for axis.default. The right-side axis is clipped off, though, and I haven't been able to figure out anything with viewport() and clipping or trellis.par.set to fix

Hi, I wanted to install Rgraphviz. From the R GUI, I downloaded the package but when I tried to load it I got the following error message: "This application has failed to start because libcdt-4.dll was not found. Re-installing the application may fix this problem." The R commands and errors are: > utils:::menuInstallPkgs() trying URL

Full_Name: Sylvain Broh?e Version: 2.2.1 OS: Suse Linux 9.2 Submission from: (NULL) (164.15.109.58) I recently went to a new version of R (2.2.1) but now, when trying to save a plot in the png format, I got this error message : > png("my_plot.png") Error in X11(paste("png::", filename, sep = ""), width, height, pointsize, : unable to start device PNG

I want to do the following: DEVw=500 DEVh=350 fname="my_plot" dev.print(file=fname, device=FOO, width=DEVw, height=DEVh, bg="transparent") How do I do this such that I can specify FOO to be one of several choices? (GDD, PNG, postscript, etc.) If I make FOO a character variable, then "dev.print" complains. I tried a simpled "substitute" but

Hi everyone, I just installed R 2.10 using the Windows binary. At some point in the past using the Windows binary installation, the default behavior of ?functionname changed from plain text to a nice html interface. Now with R 2.10, the default behavior has changed back to the plain text help. I assume this has some thing to do with these changes listed for R 2.10, but I don't quite

Hi, Is there any function to replace colProds that finds column-wise products of a matrix? Or is there any other function that would give a better solution this problem ? I have a matrix and an array, example: > a GSM1.CEL GSM2.CEL GSM1.CEL 10000_at 1 3 1 10001_at 3 3 3 > b 10000_at

I have tried to install the "genetics" package and am getting and error. The log is below. For information, I am using R 2.10.1 on the Windows XP operating system. The mirror site I'm using is Michigan Technological University. Your help in this matter will be greatly appreciated. Murray M Cooper, PhD Richland Statistics 9800 North 24th St Richland, MI, USA 49083

Hello, I am having a problem with write.fwf in Windows. I wrote a code to ingest a number of text files with weather data in them, process them, and then output a text file with two parts: 1) a set of column names, 2) the processed data table. I wrote and tested the program on my Mac, and it worked fine. However, on the windows machine, where I intend the work to be done, when I run the

Dear R-list members, I have just downloaded R version 2.11.0. Then I installed package gdata. At the end of the installation, a warning message said that package gtools could not be found. Package gdata was, after the installation, included in the "Package Index" in the help files. Messages during installation (which was made through the menu Packages / Instal package(s), choosing the

Would this return a quosure? (i.e. a single sided formula that captures both expression and environment). That's the data structure we've adopted in tidyeval as it already has some built in support. Hadley On Friday, March 17, 2017, Michael Lawrence <lawrence.michael at gene.com> wrote: > Interesting idea. Lazy and non-standard evaluation is going to happen; the > language

Dear mailing list, I have a C function that gives me a wrong result when I run it under Windows 7. This is the code under Linux (RHEL5): > library(phenoTest) > data(epheno) > sign <- sample(featureNames(epheno))[1:20] > score <- getFc(epheno)[,1] > head(score) 1007_s_at 1053_at 117_at 121_at 1255_g_at 1294_at -1.183019 1.113544 1.186186 -1.034779 -1.044456

Hi Folks, I'm curious for an explanation of the following -- it's a matter of trying to understand how R parses it. I've written sundry little "helper" variants of functions, in particular plot(), to save repetitively typing the same options over and over again. For example: plotb <- function(x,...){plot(x,pch="+",col="blue",...)} This does exactly

I made a plot, but after I made a second plot, the previous plot was gone. How can I save all the plots in a file (I do not manually copy and paste them one by one)? Thanks. Linda

Hi, I need a help. I am new in R and I need to run a nested anova with fixed and random factors (Mixed Model). I have a design with three factors: Day, Area and Plot and the dependent variable is density. The factors Day and Area are fixed while Plot is random, factor Area is nested in factor Day, and factor Plot is nested in Area. I can do it using aov by: mod1<-aov(density~ day +

This is a function I coded a few years ago to calculate a confidence interval for a coefficient of variation. The code is based on a paper by Mark Vangel in The American Statistician. I have not used the function much, but it could be useful for comparing cv's from different groups. Kevin Wright confint.cv <- function(x,alpha=.05, method="modmckay"){ # Calculate the

Hi, After performing a multiple linear regression, I am looking for an R package that can calculate the fraction [a] a partitioning of variation. This fraction measures the proportion of variance of y explained by the explanatory variable x1 (for example) when other variables (x2, x3 ...) are held constant. Thank you in advance for your help -- View this message in context: