similar to: boxplot width

I''d like to make the following changes (differences are from R1.0.1): boxplot.default() 1c1 < function (x, ..., range = 1.5, width = NULL, varwidth = FALSE, --- > function (x, ..., range = 1.5, width = NULL, varwidth = FALSE, boxwex=0.8, 37c37,38 < bxp(groups, width, varwidth = varwidth, notch = notch, --- > bxp(groups, width, varwidth = varwidth,

Hi everyone, I have the following question: given three objects let's say: a <- c( 2 , 5, 15, 16) b <- c(1 ,1, 8 , 8) c <- c (10, 10 11 ,11) m<-matrix(c(a,b,c),byrow=T,nrow=3) rownames(m)<-c("gene a", 'gene b','gene c') m gene.dist<-dist(m,method='euclidian') gene.dist which is the best way to plot their evolution in time? shoul I use a

Dear Colleagues   I have the following code that generates a boxplot for one specific labtest:   boxplot.n(LBSTRESN~COHORT, main="Boxplot of laboratory data for XLXXX-XXX test=Creatinine", subset = LBTEST=="Creatinine", xlab = "Cohort Number", ylab = "Units = umol/L", varwidth=TRUE   I would like to know if there is a way to loop through the dataset and

Hi all, Could anybody help me figure out how to write text on a boxplot. I have to plot 9 boxplots side by side on a single graph. On the x-axis I write numeric values with the 'names' argument but I'd like to add one label (character value) in the middle of each box. I know how to use the text() function for regular y~x plots but in this particular case, I'm kinda lost...

Hi, I was using Gviz package to create a boxplot. I understand that Gviz uses "panel.bwplot" to create the boxplot. Is there any way that I can remove the dashed line surrounding each pair of boxplots? Here is some sample code: ############# library(Gviz) thisdata <- matrix(sample(1:100,60),nrow=10,ncol=6) positions <- sample(1:100,6) limit1 <- min(positions)-1 limit2

Hi... I'm working through the book, A Handbook of Statistical Analyses using R by Everitt, and I'm trying to do the following (p. 19 of his book): boxplot(log(marketvalue)~country, data = subset(Forbes2000, country %in% c("United Kingdom","Germany","India","Turkey")), ylab="log(marketvalue",

Dear all, How can I plot the number of observations per box in a boxplot. Many thanks, Bernard --------------------------------- [[alternative HTML version deleted]]

To use Ron Ziegler's famous phrase, that argument is "no longer operative". The code for the bxp function, which is what is called to actually do the plotting, has a section if (!is.null(width)) { if (length(width) != n | any(is.na(width)) | any(width <= 0)) stop("invalid boxplot widths") width <- 0.8 * width/max(width) } else if (varwidth) {

> chromosomes id refseq name length 1 0 NC_000001.9 Homo sapiens chromosome 1 247249719 2 1 NC_000002.10 Homo sapiens chromosome 2 242951149 3 2 NC_000003.10 Homo sapiens chromosome 3 199501827 4 3 NC_000004.10 Homo sapiens chromosome 4 191273063 5 4 NC_000005.8 Homo sapiens chromosome 5 180857866 6 5 NC_000006.10 Homo sapiens chromosome 6

v 2.0.1 (sooooh old!) on Win2k I think I know the answer to this but I can hope ... I have data for continuous variables (measures of residents) by a categorical variable in range (1,22), the units in which they live. I want to plot these data with a pair of boxplots one above another with same x-axis (1,22) using par(mfrow=c(2,1)) and then plotting first for the women then for the men.

There seems to be a problem with partial matching of argument names in boxplot(), in respect of the "horizontal" argument. I don't recall seeing this issue discussed previously. My apologies if I am being redundant. (A scan of CRAN revealed that someone had experienced problems with the "horizontal" argument, but he was spelling it out in full, so that was a different

Dear guRus, I want to do some boxplots, but the median sould appear in another line-thickness and another color. I do not know, what to do in order to realise my wishes. Sorry for that question, but I am new to R. cheers steph -- Linux: the operating system with a CLUE... Command Line User Environment. -------------------------------------- Stephan Holl GnuPG Key-ID: 11946A09 ICQ#

Hello, I am trying to graph a violin plot like the example in panel.violin(lattice) with the singer data - see below Does anyone know how to change the color of the boxplot on the graph from blue to green? I tried a number of changes, but to no avail. Thanks for your help, John bwplot(voice.part ~ height, singer, panel = function(..., box.ratio) {

Dear all. I need to draw a scatter plot of 23 chromosome copy numbers (y axes) against chromosome and physical location within each chromosome in one plot. The data matrix looks as below: chr location copy_num 1 118345 1.320118 1 3776202 1.133879 1 4798845 0.989997 1 5350951 1.100967 . more data here . . 2 118345 2.459119 2 157739 1.915919 2 1530065 1.924372 2

Dear guRus, after solving serveral other probs with boxplots, my ylabs do not appear correct. They area cut off. I guess I have to change the letf and right margins, but I do not know how. Here is an example: http://frosch.homelinux.org/tmp/plot.png Thats the code i tried to use: <R-code> oldpar <- par() # changing the margins par(mar=c(4.1,5.1,4.1,5.1) +0.1) P <- boxplot(bs.s ~

I'm graphing a series of boxplots of grouped data inside a function that passes the data.frame, the names vector, and a title vector. Because both the data subset changes with each successive pass through the function, occasionally the names vector turns up with only one group to plot. This is an expected result. However, when the names argument in boxplot has only a single name, it

Dear R-Helpers, I am not very experienced in using lattice and I am still in the learning stage I have a data set which looks like this: (I have deleted a few lines in order to save space) Chromosome marker Marker.Name Distance 1 1 1 PeMm261 0.0000 2 1 2 Xtxp8 10.1013 .. 20 1 20 EbMi148 210.3099 21 1 21 Xtxp25

Hi, Is there such a thing? If no: is it easily simulated? thanks, Joh

[this was sent to R-help-owner instead of R-help. why on earth ??!???!? well, I took the liberty to cut the long citation.. MM] Dear Yusuke These changes look interesting. Have you considered being able to specify a different shading or crosshatching for each box. I can't see how you can do this at present. You can get different colours but of course this is no good for black

Hi, I was wondering if there is a ready made function or parameter for indicating the sample size in boxplots? Here's what I came up with so far: library(ISwR) data(energy) attach(energy) boxplot(expend~stature) sample.size <- tapply(expend, stature, length) sample.size <- paste("N=", sample.size, sep="") mtext(sample.size, at=1:length(unique(stature)), line=2,