similar to: Trouble compiling igraph. . .

Hi, I am having trouble building R static on Solaris 5.10. I have a requirement to run R within a specific user account on Solaris 5.10 and I do not have access to compilers and or shared libraries on the target machine. I thought I could build R static ( I've build it locally on Solaris with shared libraries) and just ftp the build to the target Solaris box. Can any help with what

+stable@ Yoshihiro Ota wrote: > Why are so many people are bitten by this? Is that the jobs of port-upgrading > tool to safe copy these libraries to compat so that all programs using > the old libraries works? Portupgrade preserves the libraries in /usr/local/lib/compat/pkg: % ls /usr/local/lib/compat/pkg/ libicudata.so.36.0 libicule.so.36.0 libicuuc.so.36.0

Hello, I'm having trouble getting the igraph package to load on Solaris. I can get igraph to compile and install from a local directory without issues using simply "R CMD INSTALL igraph", however "library(igraph)" from within R gives the following errors: Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library

On Wed, 2015-09-02 at 20:49 +0200, arnaud gaboury wrote: > On Wed, Sep 2, 2015 at 7:35 PM, arnaud gaboury <arnaud.gaboury at gmail.com> wrote: > > After a few days of reading and headache, I finally gave a try at > > building R from source with Intel MKL and ICC. Documentation and posts > > on this topic are rather incomplete, sometime fantasist et do not give > >

Hi R users, I got warning messages when installing the package, and I pasted the messages below. I checked updates that my R-studio is already the newest version. I don't know how to solve the problem. Thanks for your help. > library(igraph) Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared object

I have R 2.15.0 running under Windows 7. I installed the igraph 0.5.4 package from a zip file. When I attempt to load igraph using "library(igraph)", I get the error package igraph is not installed for arch=x64.  When I repeat this using the 32-bit version of R, I get the same basic error but with "arch=i386" instead of x64. [[alternative HTML version deleted]]

Dear R-SIG-Debian, I am using R version 3.1.2 with rstudio-server 0.98.113 on debian build 3.2.0-4-amd64 #1 SMP Debian 3.2.68-1+deb7u1 x86_64 GNU/Linux. I often use the %dopar% operator in from the foreach package to run code in parallel. However, the only other use on the box seemingly installed a few items and suddenly %dopar% will use far more than the number of cores I am specifying and

Hi, what does this mean? --8<---------------cut here---------------start------------->8--- > graph <- graph.data.frame(merged[!v,], vertices=ve, directed=FALSE) cedta decided 'igraph' wasn't data.table aware cedta decided 'igraph' wasn't data.table aware cedta decided 'igraph' wasn't data.table aware cedta decided 'igraph' wasn't

Dear All, I am trying to install igraph package but getting the following error: ------------------ make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 ERROR: compilation failed for package ?igraph? * removing ?/usr/lib64/R/library/igraph? ------------------ Any ideas? Thanks in advance, Paul

After a few days of reading and headache, I finally gave a try at building R from source with Intel MKL and ICC. Documentation and posts on this topic are rather incomplete, sometime fantasist et do not give much explanations about configure options. As I am not sure if mine is correct, I would appreciate some advices and hints. OS: Fedora 22 parallel_studio_xe_2016 Hardware : 8 Thread(s) per

Hi! I want to use R for network analysis and have tried to install the 'igraph' package. Unfortunately, the installation is aborted by an error: --snip-- gcc -std=gnu99 -I/usr/lib64/R/include -DNDEBUG -I/usr/local/include -DUSING_R -I. -Ics -Iglpk -Iglpk/amd -Iglpk/colamd -I/usr/local/include -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables

I am getting some unexpected results from some functions of igraph and it is possible that I am misinterpreting the vertex numbers. Eg., the max betweenness measure seems to be from a vertex that is not connected to a single other vertex. Below if my code snippet: require(igraph) my.graph <- graph.adjacency(adjmatrix = my.adj.matrix, mode=c("undirected")) most.between.vert <-

Dear R users: There appears to be a conflict between the statnet package and the igraph package. With igraph loaded into memory, the network() function of statnet failed, returning the error to the effect that the matrix being converted was "not a graph object." Removing igraph from memory restored statnet to proper function. Apologies if this is redundant. I could not find this

On Mon, Oct 9, 2017 at 4:42 PM, Tom Callaway <tcallawa at redhat.com> wrote: > > On 10/09/2017 11:16 AM, Paul Smith wrote: >> >> I am trying to install >> >> igraph package >> >> but getting the following error: >> >> ------------------ >> make: *** [/usr/lib64/R/etc/Makeconf:159: foreign-graphml.o] Error 1 >> ERROR:

Estimados, estoy ?jugando? con unos datos clínicos donde realizo un análisis de redes, utilicé igraph como nerwork, pero finalmente uso igraph (creo que tiene más opciónes). Son algo de 200 nodos y algo más de 2000 relaciones. Puedo graficarlos. Los datos están de la siguiente forma, por ejemplo, individuo, patología, (las dos primeras columnas son la relación), luego un fármaco, el grupo

Dear R users, I'm using graph library to create a mesh-like network topology and implement a load balance routing algorithm. The current implementation uses graph, RBGL, and Rgraphviz libraries. I have a few attributes on every edge to represent the network loading and capacity, and I frequently update these values. However, I found it works so slow and right now I'm consider rewriting it

Hi, So I've been figuring out how to use igraph in R and like it for it's speed and simplicity. Now I have a graph built from an edgelist where vectors have a $name attribute. I have another dataframe with attributes tied to a vector ID, which is the same as the $name attribute of vectors represented in the graph. How can I iterate over the graph by V(g)$name and do

Hi R-users, I'm using igraph for an undirected graph. i used clusters() igraph function to know the component size(subgraphs) as shown bellow: c <-clusters(g)    # component sizes size <- sort(c$csize, decreasing=TRUE) cat("Top 20 cluster of the graph","\n") for (i in 1:20) {   cat(i,"  size:",size[i] ,"\n") } Can anyone help how to extract the

Hello All, I have been trying to do bonpow for a while now.Bonpow works for few graphs and for few others it goes out of memory. I did see reply to one of the posting Alph Centrality Crashed in Igraph memory error. The solution in the posting was to use sparse matrix. This is the link of the message. http://lists.gnu.org/archive/html/igraph-help/2008-04/msg00071.html I was able to obtain

I am having trouble plotting one of my graphs (think graph theory graph with edges and vertices, not scatterplots or histograms). For some pairs of vertices, I want multiple edges to be visible in my graph. As an example of this, in my script below, I want two edges to be visible from vertex 1 and vertex 9 (among some others) yet when I plot it, only one edge is visible.